Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48498 * 109.46976 * 239.99840 * 3 2 1 5 5 H 1.48492 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46831 * 120.00409 * 3 2 1 7 7 C 1.37874 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00023 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.57110 * 299.83030 * 9 7 2 11 11 C 1.53114 * 109.52732 * 59.99434 * 9 7 2 12 12 C 1.53037 * 109.31211 * 177.54197 * 11 9 7 13 13 N 1.46854 * 109.52285 * 300.88400 * 12 11 9 14 14 C 1.46840 * 111.23238 * 61.67711 * 13 12 11 15 15 H 1.09003 * 109.45458 * 58.29272 * 14 13 12 16 16 C 1.50708 * 109.46340 * 178.26370 * 14 13 12 17 17 C 1.39870 * 126.03670 * 39.74386 * 16 14 13 18 18 N 1.30837 * 108.19987 * 179.81982 * 17 16 14 19 19 N 1.40090 * 108.20518 * 0.44094 * 18 17 16 20 20 H 0.96999 * 126.03667 * 179.70154 * 19 18 17 21 21 C 1.34944 * 107.92211 * 359.71868 * 19 18 17 22 22 C 1.53035 * 109.52994 * 298.28004 * 14 13 12 23 23 H 0.97004 * 119.99771 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.50377 * 297.50321 * 11 9 7 25 25 H 1.09003 * 109.50316 * 57.58317 * 11 9 7 26 26 H 1.09000 * 109.46159 * 60.85546 * 12 11 9 27 27 H 1.09000 * 109.46461 * 180.82902 * 12 11 9 28 28 H 1.00891 * 110.99725 * 185.80422 * 13 12 11 29 29 H 1.07998 * 125.89658 * 0.02562 * 17 16 14 30 30 H 1.08007 * 126.12034 * 179.97438 * 21 19 18 31 31 H 1.09005 * 109.50290 * 299.24575 * 22 14 13 32 32 H 1.08998 * 109.54151 * 179.13613 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6256 -2.5605 0.8890 11 6 0.3706 -2.5807 -1.2518 12 6 -0.3452 -3.9330 -1.2793 13 7 0.6485 -5.0142 -1.2862 14 6 1.4748 -4.9848 -0.0727 15 1 0.8343 -5.0737 0.8048 16 6 2.4498 -6.1336 -0.1011 17 6 3.1449 -6.5954 -1.2236 18 7 3.8960 -7.6010 -0.8541 19 7 3.6946 -7.8176 0.5152 20 1 4.1206 -8.5031 1.0532 21 6 2.8030 -6.9043 0.9534 22 6 2.2450 -3.6639 -0.0101 23 1 -0.4850 0.8401 0.0004 24 1 -0.3673 -1.7787 -1.2301 25 1 0.9919 -2.4796 -2.1417 26 1 -0.9775 -4.0273 -0.3965 27 1 -0.9614 -3.9996 -2.1760 28 1 0.2042 -5.9129 -1.3995 29 1 3.0762 -6.1897 -2.2221 30 1 2.4367 -6.8065 1.9648 31 1 2.8958 -3.5805 -0.8805 32 1 2.8466 -3.6354 0.8984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 64.696156 kcal Electronic energy + Delta-G solvation = -14991.718249 eV Core-core repulsion = 12567.181665 eV Total energy + Delta-G solvation = -2424.536584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96136 -37.59881 -33.34304 -31.58847 -30.90338 -30.40706 -27.89898 -25.27335 -22.36889 -21.83641 -21.48774 -19.69311 -18.55763 -17.51680 -16.09333 -15.33010 -14.54778 -14.33279 -14.23854 -13.72277 -13.25158 -12.70335 -12.44173 -12.37224 -12.14632 -11.51061 -10.89768 -10.75529 -10.62309 -10.51664 -10.13212 -9.93839 -9.44691 -9.36534 -9.07316 -8.68518 -8.27023 -8.15972 -7.72064 -5.92859 -3.98043 2.08185 3.07267 3.08337 3.35824 3.40118 3.43415 4.48763 4.77715 5.11533 5.21708 5.37224 5.69541 5.81918 5.97891 6.04316 6.24354 6.32216 6.34677 6.66293 6.70390 6.87693 6.96911 7.17227 7.24675 7.42140 7.55137 7.68601 7.82956 7.90975 8.03739 8.15273 8.23110 8.53905 9.05533 9.66074 11.13061 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042504 B = 0.007128 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.607438 B = 3926.988138 C = 4306.266019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.048 3.952 10 H 0.019 0.981 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.681 5.681 14 C 0.165 3.835 15 H 0.032 0.968 16 C -0.215 4.215 17 C 0.078 3.922 18 N -0.310 5.310 19 N -0.486 5.486 20 H 0.434 0.566 21 C 0.049 3.951 22 C -0.092 4.092 23 H 0.259 0.741 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.325 0.675 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.056 0.944 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -12.129 1.210 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.030 3.970 10 H 0.037 0.963 11 C -0.144 4.144 12 C -0.069 4.069 13 N -0.311 5.311 14 C 0.054 3.946 15 H 0.050 0.950 16 C -0.227 4.227 17 C -0.109 4.109 18 N -0.133 5.133 19 N -0.194 5.194 20 H 0.277 0.723 21 C -0.098 4.098 22 C -0.130 4.130 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.203 0.797 30 H 0.189 0.811 31 H 0.075 0.925 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.010 -12.482 0.452 12.847 hybrid contribution -0.576 0.882 1.297 1.671 sum 2.434 -11.600 1.749 11.981 Atomic orbital electron populations 1.69869 1.05842 1.26340 1.51157 1.24955 0.94827 0.98932 0.95261 0.86710 0.79636 0.83379 0.78566 1.20302 1.21385 1.20430 1.21177 0.92849 0.90698 1.50046 0.92855 1.18693 0.92703 0.91664 0.93980 0.96275 1.21665 1.00152 0.93301 0.99320 1.22096 0.92845 0.93608 0.98392 1.60311 1.25826 1.06096 1.38902 1.19788 0.91649 0.92536 0.90614 0.94982 1.20301 1.06952 1.02716 0.92727 1.23807 0.93530 0.93214 1.00344 1.77286 1.24464 1.20858 0.90674 1.46216 1.36429 1.28589 1.08209 0.72304 1.22332 0.95059 0.92390 1.00063 1.21680 0.98476 0.92575 1.00268 0.93094 0.89112 0.93851 0.96419 0.92602 0.85896 0.79747 0.81109 0.92500 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.07 8.57 -34.44 -0.30 -14.37 16 8 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.19 2.17 -91.65 -0.20 1.00 16 10 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 11 C -0.11 -2.50 5.12 -26.65 -0.14 -2.63 16 12 C 0.06 1.14 6.55 -3.83 -0.03 1.11 16 13 N -0.68 -11.73 6.24 -107.98 -0.67 -12.41 16 14 C 0.16 2.90 2.86 -68.88 -0.20 2.70 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.22 -3.32 5.00 -105.05 -0.53 -3.84 16 17 C 0.08 1.20 11.66 -17.36 -0.20 1.00 16 18 N -0.31 -4.68 12.70 30.62 0.39 -4.29 16 19 N -0.49 -5.88 7.36 30.44 0.22 -5.65 16 20 H 0.43 3.62 8.96 -182.61 -1.64 1.99 16 21 C 0.05 0.62 11.90 -17.23 -0.20 0.42 16 22 C -0.09 -1.94 4.58 -26.65 -0.12 -2.06 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 24 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.32 4.88 8.78 -39.30 -0.35 4.54 16 29 H 0.19 2.71 8.06 -52.49 -0.42 2.29 16 30 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -30.10 265.27 -8.10 -38.21 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.65 Total: 3.65 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.00 Total: -15.08 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.57 Total: -47.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.10 -8.10 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.905 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds