Wall clock time and date at job start Mon Mar 30 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 117.00112 * 2 1 4 4 C 1.38732 * 120.05379 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94035 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94505 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47014 * 340.00904 * 7 6 5 9 9 N 1.46894 * 109.47318 * 220.00045 * 7 6 5 10 10 C 1.53002 * 109.46676 * 100.00067 * 7 6 5 11 11 C 1.50706 * 109.47153 * 184.99784 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38269 * 120.11128 * 0.27853 * 6 5 4 20 20 C 1.38144 * 120.05376 * 359.44726 * 19 6 5 21 21 H 1.09001 * 109.46707 * 300.00030 * 1 2 3 22 22 H 1.09003 * 109.47055 * 59.99658 * 1 2 3 23 23 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.03234 * 359.95295 * 4 3 2 25 25 H 1.08000 * 119.96790 * 180.02562 * 5 4 3 26 26 H 1.00897 * 111.00410 * 300.00429 * 9 7 6 27 27 H 1.00904 * 110.99735 * 63.96143 * 9 7 6 28 28 H 1.09004 * 109.47178 * 65.00574 * 10 7 6 29 29 H 1.08993 * 109.47411 * 305.00257 * 10 7 6 30 30 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 31 31 H 1.08001 * 119.97090 * 179.70303 * 19 6 5 32 32 H 1.08002 * 120.02397 * 180.27360 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0114 4.9038 0.3502 9 7 3.2629 5.9366 0.8881 10 6 3.9950 5.5863 -1.4224 11 6 4.7852 6.8693 -1.4457 12 1 5.2363 7.2422 -0.5380 13 6 4.9323 7.5671 -2.6257 14 7 4.3874 7.1102 -3.7320 15 14 5.9123 9.1571 -2.6547 16 1 5.9259 9.7051 -4.0348 17 1 5.2851 10.1420 -1.7371 18 1 7.3050 8.8881 -2.2152 19 6 1.9212 3.6047 0.0042 20 6 1.2916 2.3751 -0.0010 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 4.0210 0.3799 -0.0002 25 1 5.1346 2.5749 -0.0019 26 1 2.3090 6.0595 0.5830 27 1 3.2982 5.6163 1.8443 28 1 2.9715 5.7842 -1.7409 29 1 4.4531 4.8650 -2.0990 30 1 3.8787 6.2845 -3.7171 31 1 1.3343 4.5114 0.0086 32 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259540640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:06 Heat of formation + Delta-G solvation = -24.838781 kcal Electronic energy + Delta-G solvation = -14529.895858 eV Core-core repulsion = 12069.183997 eV Total energy + Delta-G solvation = -2460.711862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05892 -37.92077 -34.96015 -32.56876 -30.91317 -29.49664 -27.89165 -27.15291 -23.92404 -22.54784 -21.79540 -19.83683 -18.12315 -16.79603 -16.11757 -15.75072 -15.33297 -14.93931 -14.42022 -13.79704 -13.61201 -13.29393 -13.02279 -12.66231 -12.44016 -11.97042 -11.63703 -11.26253 -10.94476 -10.90635 -10.65753 -10.35411 -10.03634 -9.75574 -8.83687 -8.59535 -8.22343 -7.98991 -7.77708 -6.21960 -3.88090 1.51076 1.62138 3.27832 3.52417 3.55244 3.73523 3.94837 4.65915 4.84119 4.97454 5.02160 5.07052 5.28815 5.30439 5.32908 5.54999 5.59278 5.63923 5.82317 6.03217 6.27966 6.41396 6.53222 6.64650 6.88182 6.95284 7.30393 7.45999 7.47798 7.91354 8.12299 8.37109 8.66231 9.02795 9.81278 11.18136 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053771 B = 0.005730 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.602414 B = 4885.639461 C = 4964.724339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.108 3.892 4 C -0.149 4.149 5 C -0.077 4.077 6 C -0.134 4.134 7 C 0.142 3.858 8 H 0.078 0.922 9 N -0.820 5.820 10 C 0.024 3.976 11 C -0.575 4.575 12 H 0.056 0.944 13 C 0.008 3.992 14 N -0.922 5.922 15 Si 1.070 2.930 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.290 1.290 19 C -0.082 4.082 20 C -0.204 4.204 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.332 0.668 27 H 0.323 0.677 28 H 0.006 0.994 29 H 0.010 0.990 30 H 0.265 0.735 31 H 0.121 0.879 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 -11.777 8.818 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.064 3.936 4 C -0.168 4.168 5 C -0.096 4.096 6 C -0.137 4.137 7 C 0.030 3.970 8 H 0.096 0.904 9 N -0.347 5.347 10 C -0.013 4.013 11 C -0.614 4.614 12 H 0.074 0.926 13 C -0.194 4.194 14 N -0.559 5.559 15 Si 0.899 3.101 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.216 1.216 19 C -0.101 4.101 20 C -0.223 4.223 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.114 0.886 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.134 0.866 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.613 -10.165 7.596 13.875 hybrid contribution -1.545 -2.025 1.141 2.791 sum -7.158 -12.189 8.737 16.617 Atomic orbital electron populations 1.22992 0.78858 1.03493 1.01280 1.86031 1.21028 1.27287 1.89270 1.18959 0.92361 0.83871 0.98456 1.20396 0.91246 0.98530 1.06630 1.20929 1.00019 0.90938 0.97725 1.21342 0.94101 0.98270 0.99945 1.20579 0.95686 0.83849 0.96884 0.90411 1.58837 1.19783 1.51834 1.04241 1.19250 0.96789 0.96381 0.88898 1.21962 1.34668 1.07661 0.97093 0.92615 1.25819 0.97886 1.03287 0.92418 1.70791 1.33392 1.22961 1.28763 0.83527 0.75706 0.75266 0.75600 1.21116 1.21544 1.21638 1.20761 0.94369 0.96790 0.98146 1.21141 0.99571 0.92424 1.09130 0.92898 0.92764 0.88553 0.85593 0.85339 0.85463 0.86641 0.97619 0.97193 0.92440 0.86144 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.35 10.50 -19.44 -0.20 -4.56 16 3 C 0.11 1.62 6.69 -39.22 -0.26 1.36 16 4 C -0.15 -2.27 9.99 -39.43 -0.39 -2.66 16 5 C -0.08 -1.26 9.66 -39.61 -0.38 -1.65 16 6 C -0.13 -2.39 4.95 -104.60 -0.52 -2.90 16 7 C 0.14 2.90 2.93 -68.87 -0.20 2.70 16 8 H 0.08 1.63 8.00 -51.93 -0.42 1.21 16 9 N -0.82 -15.40 8.77 -5.66 -0.05 -15.45 16 10 C 0.02 0.62 3.91 -27.88 -0.11 0.51 16 11 C -0.58 -16.56 8.84 -34.44 -0.30 -16.87 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.01 0.24 5.46 -17.82 -0.10 0.14 16 14 N -0.92 -28.89 13.65 55.43 0.76 -28.13 16 15 Si 1.07 26.10 29.90 -169.99 -5.08 21.02 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.08 -1.34 9.29 -39.60 -0.37 -1.71 16 20 C -0.20 -2.99 9.04 -39.44 -0.36 -3.34 16 21 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 25 H 0.13 1.92 8.03 -52.49 -0.42 1.50 16 26 H 0.33 5.93 7.33 -39.29 -0.29 5.65 16 27 H 0.32 5.11 9.06 -39.29 -0.36 4.76 16 28 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 29 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 30 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 31 H 0.12 1.86 6.65 -52.49 -0.35 1.51 16 32 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -32.67 272.59 -6.60 -39.27 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.13 Total: 6.89 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -2.00 Total: -23.16 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.71 Total: -43.58 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.67 -6.60 -39.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259540640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.436 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds