Wall clock time and date at job start Mon Mar 30 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 117.00112 * 2 1 4 4 C 1.38732 * 120.05379 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94035 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94505 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47014 * 340.00904 * 7 6 5 9 9 N 1.46894 * 109.47318 * 220.00045 * 7 6 5 10 10 C 1.53002 * 109.46676 * 100.00067 * 7 6 5 11 11 C 1.50706 * 109.47153 * 184.99784 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.38269 * 120.11128 * 0.27853 * 6 5 4 20 20 C 1.38144 * 120.05376 * 359.44726 * 19 6 5 21 21 H 1.09001 * 109.46707 * 300.00030 * 1 2 3 22 22 H 1.09003 * 109.47055 * 59.99658 * 1 2 3 23 23 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.03234 * 359.95295 * 4 3 2 25 25 H 1.08000 * 119.96790 * 180.02562 * 5 4 3 26 26 H 1.00897 * 111.00410 * 300.00429 * 9 7 6 27 27 H 1.00904 * 110.99735 * 63.96143 * 9 7 6 28 28 H 1.09004 * 109.47178 * 65.00574 * 10 7 6 29 29 H 1.08993 * 109.47411 * 305.00257 * 10 7 6 30 30 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 31 31 H 1.08001 * 119.97090 * 179.70303 * 19 6 5 32 32 H 1.08002 * 120.02397 * 180.27360 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0114 4.9038 0.3502 9 7 3.2629 5.9366 0.8881 10 6 3.9950 5.5863 -1.4224 11 6 4.7852 6.8693 -1.4457 12 1 5.2363 7.2422 -0.5380 13 6 4.9323 7.5671 -2.6257 14 7 4.3874 7.1102 -3.7320 15 14 5.9123 9.1571 -2.6547 16 1 5.9259 9.7051 -4.0348 17 1 5.2851 10.1420 -1.7371 18 1 7.3050 8.8881 -2.2152 19 6 1.9212 3.6047 0.0042 20 6 1.2916 2.3751 -0.0010 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 4.0210 0.3799 -0.0002 25 1 5.1346 2.5749 -0.0019 26 1 2.3090 6.0595 0.5830 27 1 3.2982 5.6163 1.8443 28 1 2.9715 5.7842 -1.7409 29 1 4.4531 4.8650 -2.0990 30 1 3.8787 6.2845 -3.7171 31 1 1.3343 4.5114 0.0086 32 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259540640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:05 Heat of formation + Delta-G solvation = -47.314677 kcal Electronic energy + Delta-G solvation = -14530.870486 eV Core-core repulsion = 12069.183997 eV Total energy + Delta-G solvation = -2461.686490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20454 -39.16070 -36.57165 -34.62541 -32.11644 -30.73421 -29.79059 -28.11716 -25.80219 -24.03604 -23.18634 -21.36295 -19.21404 -18.87630 -17.39207 -16.77558 -16.67466 -16.39873 -15.66784 -15.59751 -15.18957 -14.59751 -14.36711 -14.26448 -13.84081 -13.41184 -12.96728 -12.90996 -12.57913 -12.32173 -12.23668 -11.92729 -11.79615 -11.50302 -10.70305 -10.48473 -10.03942 -9.53991 -9.05531 -8.58074 -6.25189 0.30664 0.37138 1.55636 1.64778 1.83746 2.32825 2.62263 2.71584 3.24297 3.75216 3.82428 3.87450 3.95023 4.24687 4.34575 4.35494 4.42406 4.52708 4.65233 4.69699 4.82226 5.00071 5.15921 5.21129 5.30972 5.38240 5.66120 5.73168 6.08842 6.30897 6.38604 6.40051 6.66352 6.77072 7.53402 8.81939 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053771 B = 0.005730 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.602414 B = 4885.639461 C = 4964.724339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.110 3.890 4 C -0.156 4.156 5 C -0.085 4.085 6 C -0.157 4.157 7 C 0.156 3.844 8 H 0.069 0.931 9 N -0.828 5.828 10 C 0.030 3.970 11 C -0.584 4.584 12 H 0.053 0.947 13 C -0.047 4.047 14 N -0.947 5.947 15 Si 1.118 2.882 16 H -0.287 1.287 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.088 4.088 20 C -0.203 4.203 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.123 0.877 24 H 0.145 0.855 25 H 0.135 0.865 26 H 0.337 0.663 27 H 0.342 0.658 28 H -0.014 1.014 29 H -0.015 1.015 30 H 0.251 0.749 31 H 0.124 0.876 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 -12.345 9.901 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.065 3.935 4 C -0.174 4.174 5 C -0.103 4.103 6 C -0.160 4.160 7 C 0.044 3.956 8 H 0.088 0.912 9 N -0.357 5.357 10 C -0.008 4.008 11 C -0.622 4.622 12 H 0.071 0.929 13 C -0.242 4.242 14 N -0.586 5.586 15 Si 0.940 3.060 16 H -0.213 1.213 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.107 4.107 20 C -0.221 4.221 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.141 0.859 24 H 0.163 0.837 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.004 0.996 29 H 0.003 0.997 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.179 -10.762 8.713 15.162 hybrid contribution -1.468 -1.975 0.831 2.598 sum -7.647 -12.737 9.544 17.658 Atomic orbital electron populations 1.23348 0.76530 1.05673 1.02110 1.86032 1.23423 1.26360 1.88817 1.19127 0.92544 0.84652 0.97167 1.20615 0.91913 0.98671 1.06222 1.21050 1.00472 0.91100 0.97696 1.21068 0.94891 0.97132 1.02866 1.20116 0.96092 0.85507 0.93845 0.91249 1.58719 1.20008 1.51818 1.05179 1.19108 0.94666 0.95026 0.91977 1.22316 1.34396 1.08613 0.96858 0.92902 1.27357 0.98302 1.06417 0.92134 1.70931 1.34928 1.22931 1.29805 0.82912 0.75405 0.71773 0.75885 1.21268 1.19718 1.19565 1.20872 0.93839 0.97842 0.98139 1.21390 1.01040 0.91548 1.08150 0.91647 0.92260 0.85888 0.83733 0.84735 0.84933 0.84526 0.99621 0.99697 0.93993 0.85770 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.11 10.50 -92.49 -0.97 -9.09 16 3 C 0.11 3.10 6.69 22.50 0.15 3.25 16 4 C -0.16 -4.51 9.99 22.37 0.22 -4.29 16 5 C -0.08 -2.73 9.66 22.25 0.21 -2.51 16 6 C -0.16 -5.58 4.95 -19.85 -0.10 -5.68 16 7 C 0.16 6.48 2.93 44.17 0.13 6.61 16 8 H 0.07 2.95 8.00 -2.39 -0.02 2.93 16 9 N -0.83 -30.79 8.77 -171.81 -1.51 -32.30 16 10 C 0.03 1.56 3.91 29.85 0.12 1.68 16 11 C -0.58 -34.04 8.84 25.60 0.23 -33.81 16 12 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 13 C -0.05 -2.77 5.46 84.65 0.46 -2.31 16 14 N -0.95 -60.57 13.65 21.45 0.29 -60.28 16 15 Si 1.12 52.21 29.90 68.60 2.05 54.26 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.09 -2.81 9.29 22.25 0.21 -2.61 16 20 C -0.20 -5.54 9.04 22.36 0.20 -5.34 16 21 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 22 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 23 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 25 H 0.13 4.03 8.03 -2.91 -0.02 4.00 16 26 H 0.34 11.94 7.33 -89.70 -0.66 11.28 16 27 H 0.34 10.49 9.06 -89.69 -0.81 9.68 16 28 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 29 H -0.02 -0.87 8.00 -2.39 -0.02 -0.89 16 30 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 31 H 0.12 3.76 6.65 -2.91 -0.02 3.74 16 32 H 0.15 3.17 6.30 -2.91 -0.02 3.15 16 Total: -1.00 -70.29 272.59 2.57 -67.71 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.24 Total: 23.31 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 2.95 Total: -43.63 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -1.21 Total: -92.58 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.97 Total: -9.09 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Total: -70.29 2.57 -67.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259540640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -70.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds