Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99772 * 2 1 4 4 C 1.38735 * 120.05053 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94141 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05318 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93863 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47818 * 20.00390 * 7 6 5 9 9 N 1.46904 * 109.46791 * 139.99994 * 7 6 5 10 10 C 1.53002 * 109.47362 * 259.99966 * 7 6 5 11 11 C 1.50706 * 109.46925 * 175.00269 * 10 7 6 12 12 H 1.07999 * 120.00196 * 0.02562 * 11 10 7 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86789 * 120.00458 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47200 * 90.00092 * 15 13 11 17 17 H 1.48505 * 109.47499 * 210.00153 * 15 13 11 18 18 H 1.48500 * 109.47262 * 330.00415 * 15 13 11 19 19 C 1.38259 * 120.11346 * 0.27443 * 6 5 4 20 20 C 1.38145 * 120.05555 * 359.44906 * 19 6 5 21 21 H 1.09007 * 109.47316 * 300.00650 * 1 2 3 22 22 H 1.09004 * 109.46819 * 60.00002 * 1 2 3 23 23 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.07992 * 120.02958 * 359.95178 * 4 3 2 25 25 H 1.07991 * 119.97065 * 180.02562 * 5 4 3 26 26 H 1.00901 * 110.99866 * 60.00569 * 9 7 6 27 27 H 1.00900 * 111.00058 * 183.95185 * 9 7 6 28 28 H 1.09000 * 109.46497 * 55.00532 * 10 7 6 29 29 H 1.09000 * 109.47312 * 295.00312 * 10 7 6 30 30 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.97358 * 179.70191 * 19 6 5 32 32 H 1.08003 * 120.02932 * 180.27468 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0119 4.9036 -0.3518 9 7 3.2641 5.9359 -0.8933 10 6 3.9928 5.5875 1.4186 11 6 4.7831 6.8705 1.4420 12 1 5.2350 7.2430 0.5345 13 6 4.9292 7.5688 2.6219 14 7 5.6184 8.6887 2.6421 15 14 4.1471 6.9249 4.1912 16 1 5.1046 6.0310 4.8909 17 1 3.7988 8.0662 5.0752 18 1 2.9160 6.1654 3.8553 19 6 1.9211 3.6048 0.0030 20 6 1.2916 2.3751 -0.0022 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 4.0208 0.3800 0.0017 25 1 5.1345 2.5750 0.0000 26 1 2.3099 6.0591 -0.5896 27 1 3.7395 6.8233 -0.9609 28 1 4.4500 4.8668 2.0966 29 1 2.9689 5.7856 1.7355 30 1 5.7208 9.1801 3.4722 31 1 1.3342 4.5114 0.0066 32 1 0.2129 2.3202 -0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259540644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -22.606067 kcal Electronic energy + Delta-G solvation = -14560.028568 eV Core-core repulsion = 12099.413524 eV Total energy + Delta-G solvation = -2460.615044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96668 -37.82505 -35.02345 -32.40148 -30.83035 -29.55612 -28.54493 -27.23838 -24.23961 -22.39112 -21.55849 -19.62194 -18.06083 -17.11804 -16.11323 -15.69015 -15.16894 -14.60192 -14.33722 -14.16759 -13.48173 -13.23525 -12.87936 -12.72133 -12.49872 -12.06340 -11.91344 -11.53161 -11.21512 -10.78056 -10.67162 -10.50109 -10.11319 -9.79254 -9.26337 -8.73502 -8.62840 -8.06526 -7.61546 -6.13220 -4.12667 1.61516 1.73504 3.25413 3.33236 3.34667 3.37130 4.05856 4.38037 4.91478 5.05782 5.07230 5.14746 5.18770 5.27806 5.36110 5.59136 5.69523 5.73983 5.92207 6.10976 6.37550 6.47399 6.54114 6.62319 6.97284 7.00189 7.05994 7.28261 7.53824 7.67532 7.94694 8.21336 8.42009 8.89657 9.49272 10.99475 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.006647 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.816289 B = 4211.143549 C = 4469.798960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.106 3.894 4 C -0.151 4.151 5 C -0.080 4.080 6 C -0.086 4.086 7 C 0.138 3.862 8 H 0.081 0.919 9 N -0.839 5.839 10 C -0.038 4.038 11 C -0.525 4.525 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.071 4.071 20 C -0.207 4.207 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.327 0.673 27 H 0.351 0.649 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.122 0.878 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 -13.897 -4.438 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.062 3.938 4 C -0.169 4.169 5 C -0.099 4.099 6 C -0.087 4.087 7 C 0.027 3.973 8 H 0.099 0.901 9 N -0.368 5.368 10 C -0.077 4.077 11 C -0.563 4.563 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.089 4.089 20 C -0.226 4.226 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.143 0.857 25 H 0.147 0.853 26 H 0.138 0.862 27 H 0.165 0.835 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.031 -14.468 -4.900 17.745 hybrid contribution -0.725 0.545 1.903 2.108 sum -9.756 -13.923 -2.997 17.263 Atomic orbital electron populations 1.22978 0.78971 1.03373 1.01264 1.86023 1.20938 1.27404 1.89358 1.18948 0.92357 0.83818 0.98712 1.20331 0.91204 0.98395 1.06989 1.20877 1.00002 0.90898 0.98094 1.20106 0.93553 0.95761 0.99235 1.20270 0.96262 0.87528 0.93268 0.90085 1.59252 1.06024 1.18056 1.53444 1.20319 0.97193 0.96928 0.93237 1.21062 1.32934 1.05410 0.96873 0.90746 1.24997 0.94623 0.94594 0.98935 1.69911 1.40652 1.15707 1.27471 0.86799 0.80481 0.78571 0.83543 1.20224 1.21373 1.19151 1.20730 0.94383 0.96612 0.97210 1.21145 0.99518 0.92467 1.09430 0.92871 0.92848 0.88679 0.85667 0.85320 0.86180 0.83493 0.96606 0.96612 0.92641 0.86040 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.36 10.50 -19.43 -0.20 -4.56 16 3 C 0.11 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.15 -2.27 9.99 -39.43 -0.39 -2.66 16 5 C -0.08 -1.30 9.66 -39.60 -0.38 -1.68 16 6 C -0.09 -1.52 4.96 -104.60 -0.52 -2.04 16 7 C 0.14 2.73 2.99 -68.86 -0.21 2.53 16 8 H 0.08 1.65 8.00 -51.93 -0.42 1.23 16 9 N -0.84 -15.51 9.02 -5.65 -0.05 -15.56 16 10 C -0.04 -0.88 3.67 -27.88 -0.10 -0.98 16 11 C -0.52 -14.32 9.10 -34.44 -0.31 -14.63 16 12 H 0.07 2.16 7.39 -52.49 -0.39 1.77 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 15 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 C -0.07 -1.16 9.28 -39.61 -0.37 -1.52 16 20 C -0.21 -3.02 9.04 -39.43 -0.36 -3.38 16 21 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 22 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.13 1.88 8.03 -52.49 -0.42 1.46 16 26 H 0.33 5.63 7.35 -39.29 -0.29 5.35 16 27 H 0.35 6.83 7.90 -39.29 -0.31 6.52 16 28 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.12 1.86 6.67 -52.48 -0.35 1.51 16 32 H 0.12 1.45 6.30 -52.48 -0.33 1.12 16 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -30.51 268.60 -6.19 -36.70 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.08 Total: 8.63 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.01 Total: -19.88 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.72 Total: -41.91 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.51 -6.19 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259540644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.096 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds