Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99772 * 2 1 4 4 C 1.38735 * 120.05053 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94141 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05318 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93863 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47818 * 20.00390 * 7 6 5 9 9 N 1.46904 * 109.46791 * 139.99994 * 7 6 5 10 10 C 1.53002 * 109.47362 * 259.99966 * 7 6 5 11 11 C 1.50706 * 109.46925 * 175.00269 * 10 7 6 12 12 H 1.07999 * 120.00196 * 0.02562 * 11 10 7 13 13 C 1.37879 * 119.99394 * 180.02562 * 11 10 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 10 15 15 Si 1.86789 * 120.00458 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47200 * 90.00092 * 15 13 11 17 17 H 1.48505 * 109.47499 * 210.00153 * 15 13 11 18 18 H 1.48500 * 109.47262 * 330.00415 * 15 13 11 19 19 C 1.38259 * 120.11346 * 0.27443 * 6 5 4 20 20 C 1.38145 * 120.05555 * 359.44906 * 19 6 5 21 21 H 1.09007 * 109.47316 * 300.00650 * 1 2 3 22 22 H 1.09004 * 109.46819 * 60.00002 * 1 2 3 23 23 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.07992 * 120.02958 * 359.95178 * 4 3 2 25 25 H 1.07991 * 119.97065 * 180.02562 * 5 4 3 26 26 H 1.00901 * 110.99866 * 60.00569 * 9 7 6 27 27 H 1.00900 * 111.00058 * 183.95185 * 9 7 6 28 28 H 1.09000 * 109.46497 * 55.00532 * 10 7 6 29 29 H 1.09000 * 109.47312 * 295.00312 * 10 7 6 30 30 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 31 31 H 1.08006 * 119.97358 * 179.70191 * 19 6 5 32 32 H 1.08003 * 120.02932 * 180.27468 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0119 4.9036 -0.3518 9 7 3.2641 5.9359 -0.8933 10 6 3.9928 5.5875 1.4186 11 6 4.7831 6.8705 1.4420 12 1 5.2350 7.2430 0.5345 13 6 4.9292 7.5688 2.6219 14 7 5.6184 8.6887 2.6421 15 14 4.1471 6.9249 4.1912 16 1 5.1046 6.0310 4.8909 17 1 3.7988 8.0662 5.0752 18 1 2.9160 6.1654 3.8553 19 6 1.9211 3.6048 0.0030 20 6 1.2916 2.3751 -0.0022 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 4.0208 0.3800 0.0017 25 1 5.1345 2.5750 0.0000 26 1 2.3099 6.0591 -0.5896 27 1 3.7395 6.8233 -0.9609 28 1 4.4500 4.8668 2.0966 29 1 2.9689 5.7856 1.7355 30 1 5.7208 9.1801 3.4722 31 1 1.3342 4.5114 0.0066 32 1 0.2129 2.3202 -0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259540644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -43.490545 kcal Electronic energy + Delta-G solvation = -14560.934187 eV Core-core repulsion = 12099.413524 eV Total energy + Delta-G solvation = -2461.520663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07666 -39.03655 -36.54493 -34.45292 -31.99936 -30.76226 -30.43477 -28.12593 -25.89060 -23.70434 -22.98635 -21.13356 -19.26909 -18.95308 -17.38560 -16.61300 -16.56395 -16.31648 -15.79033 -15.48961 -15.05478 -14.55668 -14.35377 -14.07754 -14.05632 -13.55416 -13.18920 -12.88078 -12.72232 -12.36334 -12.13071 -11.78750 -11.75225 -11.57851 -11.26195 -10.81075 -9.90214 -9.52558 -8.92448 -8.31984 -6.35532 0.44328 0.51872 1.31640 1.33334 1.44144 2.31999 2.42559 2.84673 3.03188 3.82630 3.89274 4.01985 4.16645 4.33218 4.42420 4.49482 4.50835 4.62349 4.75844 4.79139 4.82334 5.10681 5.12329 5.32482 5.34505 5.44100 5.60888 5.80238 5.86920 6.21173 6.38628 6.49963 6.70523 6.71952 7.29604 8.83760 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.006647 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.816289 B = 4211.143549 C = 4469.798960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.107 3.893 4 C -0.157 4.157 5 C -0.087 4.087 6 C -0.111 4.111 7 C 0.148 3.852 8 H 0.067 0.933 9 N -0.831 5.831 10 C -0.031 4.031 11 C -0.524 4.524 12 H 0.044 0.956 13 C 0.012 3.988 14 N -0.945 5.945 15 Si 0.942 3.058 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.253 1.253 19 C -0.079 4.079 20 C -0.205 4.205 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.121 0.879 24 H 0.143 0.857 25 H 0.136 0.864 26 H 0.335 0.665 27 H 0.343 0.657 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.266 0.734 31 H 0.128 0.872 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 -16.004 -4.021 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.062 3.938 4 C -0.175 4.175 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.036 3.964 8 H 0.086 0.914 9 N -0.360 5.360 10 C -0.070 4.070 11 C -0.563 4.563 12 H 0.062 0.938 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.767 3.233 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.177 1.177 19 C -0.097 4.097 20 C -0.224 4.224 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.161 0.839 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.973 -16.598 -4.497 20.400 hybrid contribution -0.165 1.127 1.682 2.031 sum -11.138 -15.471 -2.816 19.270 Atomic orbital electron populations 1.23325 0.76668 1.05501 1.02116 1.86023 1.23316 1.26559 1.88941 1.19124 0.92554 0.84594 0.97499 1.20552 0.91858 0.98550 1.06578 1.21012 1.00509 0.91019 0.98032 1.19949 0.94394 0.94737 1.02108 1.20045 0.96298 0.89019 0.91052 0.91440 1.59237 1.06344 1.17419 1.52976 1.20244 0.96131 0.94882 0.95710 1.21351 1.32458 1.06746 0.95697 0.93796 1.25863 0.95346 0.94808 1.02551 1.70049 1.42661 1.17342 1.28496 0.85776 0.80042 0.78154 0.79338 1.19646 1.20961 1.17689 1.20869 0.93865 0.97741 0.97259 1.21393 1.00985 0.91590 1.08417 0.92090 0.91821 0.86118 0.83900 0.84648 0.85199 0.84402 0.96937 0.96448 0.92530 0.85434 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.96 10.50 -92.44 -0.97 -8.93 16 3 C 0.11 2.92 6.69 22.51 0.15 3.07 16 4 C -0.16 -4.40 9.99 22.37 0.22 -4.18 16 5 C -0.09 -2.72 9.66 22.26 0.22 -2.50 16 6 C -0.11 -3.82 4.96 -19.85 -0.10 -3.92 16 7 C 0.15 5.82 2.99 44.17 0.13 5.96 16 8 H 0.07 2.80 8.00 -2.39 -0.02 2.78 16 9 N -0.83 -30.63 9.02 -171.80 -1.55 -32.18 16 10 C -0.03 -1.41 3.67 29.85 0.11 -1.30 16 11 C -0.52 -29.08 9.10 25.60 0.23 -28.85 16 12 H 0.04 2.64 7.39 -2.91 -0.02 2.62 16 13 C 0.01 0.68 5.47 84.66 0.46 1.14 16 14 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 15 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 19 C -0.08 -2.42 9.28 22.25 0.21 -2.21 16 20 C -0.21 -5.40 9.04 22.36 0.20 -5.20 16 21 H 0.06 0.82 7.67 -2.38 -0.02 0.80 16 22 H 0.06 0.83 7.66 -2.38 -0.02 0.81 16 23 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 25 H 0.14 3.88 8.03 -2.91 -0.02 3.85 16 26 H 0.34 11.31 7.35 -89.69 -0.66 10.65 16 27 H 0.34 13.61 7.90 -89.69 -0.71 12.90 16 28 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 29 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 30 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 31 H 0.13 3.64 6.67 -2.91 -0.02 3.62 16 32 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 Total: -1.00 -64.97 268.60 2.32 -62.65 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.29 Total: 26.73 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 2.95 Total: -36.61 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.25 Total: -90.05 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.97 Total: -8.93 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -64.97 2.32 -62.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259540644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.156 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds