Wall clock time and date at job start Mon Mar 30 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38180 * 120.39963 * 2 1 4 4 C 1.39668 * 118.31990 * 180.02562 * 3 2 1 5 5 N 1.38528 * 120.53531 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99884 * 4.99869 * 5 4 3 7 7 H 1.07996 * 119.99867 * 31.17321 * 6 5 4 8 8 C 1.38848 * 119.99539 * 210.89306 * 6 5 4 9 9 N 1.31538 * 120.00011 * 18.31780 * 8 6 5 10 10 Si 1.86799 * 119.99831 * 198.31121 * 8 6 5 11 11 H 1.48496 * 109.47103 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47123 * 120.00350 * 10 8 6 13 13 H 1.48498 * 109.47207 * 240.00144 * 10 8 6 14 14 C 1.46500 * 119.99906 * 185.00060 * 5 4 3 15 15 C 1.53004 * 109.46646 * 299.11905 * 14 5 4 16 16 C 1.52997 * 109.47234 * 59.11700 * 14 5 4 17 17 N 1.33062 * 118.92394 * 0.25018 * 4 3 2 18 18 C 1.31703 * 120.68619 * 359.48922 * 17 4 3 19 19 N 1.31824 * 121.85026 * 0.52878 * 18 17 4 20 20 H 1.08994 * 109.47010 * 89.99817 * 1 2 3 21 21 H 1.08998 * 109.46540 * 210.00036 * 1 2 3 22 22 H 1.09004 * 109.47186 * 329.99658 * 1 2 3 23 23 H 1.08005 * 120.83970 * 0.04620 * 3 2 1 24 24 H 0.96999 * 119.99350 * 179.97438 * 9 8 6 25 25 H 1.08991 * 109.46942 * 179.12254 * 14 5 4 26 26 H 1.09001 * 109.47180 * 60.00524 * 15 14 5 27 27 H 1.09004 * 109.46686 * 180.02562 * 15 14 5 28 28 H 1.08998 * 109.47531 * 300.00303 * 15 14 5 29 29 H 1.08997 * 109.46999 * 60.00144 * 16 14 5 30 30 H 1.08995 * 109.46959 * 179.97438 * 16 14 5 31 31 H 1.09002 * 109.47226 * 300.00465 * 16 14 5 32 32 H 1.08003 * 119.07278 * 180.24324 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2063 1.1918 0.0000 4 6 3.6021 1.1411 -0.0005 5 7 4.3487 2.3080 -0.0011 6 6 3.7227 3.5215 0.1022 7 1 2.8023 3.6084 0.6605 8 6 4.2743 4.6412 -0.5059 9 7 5.1690 4.4980 -1.4595 10 14 3.7459 6.3508 0.0301 11 1 2.7354 6.2399 1.1126 12 1 4.9266 7.0996 0.5306 13 1 3.1562 7.0719 -1.1263 14 6 5.8081 2.2437 -0.1123 15 6 6.3759 1.4618 1.0740 16 6 6.1897 1.5403 -1.4163 17 7 4.2029 -0.0461 -0.0061 18 6 3.4959 -1.1572 -0.0010 19 7 2.1777 -1.1430 -0.0005 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6866 2.1386 0.0007 24 1 5.5540 5.2803 -1.8845 25 1 6.2173 3.2538 -0.1110 26 1 5.9665 0.4516 1.0727 27 1 7.4617 1.4144 0.9916 28 1 6.1039 1.9628 2.0031 29 1 5.7852 2.0973 -2.2614 30 1 7.2755 1.4929 -1.4991 31 1 5.7804 0.5301 -1.4175 32 1 4.0106 -2.1067 -0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259542182.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:12 Heat of formation + Delta-G solvation = 40.131691 kcal Electronic energy + Delta-G solvation = -15411.520110 eV Core-core repulsion = 12985.918331 eV Total energy + Delta-G solvation = -2425.601779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45207 -38.75500 -34.89368 -33.98889 -33.57290 -31.21000 -28.66659 -27.82329 -26.82060 -24.35696 -23.38988 -21.31878 -19.47031 -17.87212 -17.52743 -16.42108 -15.92812 -15.70877 -15.52509 -15.32225 -14.61546 -14.52693 -13.76520 -13.63205 -13.51145 -13.05000 -13.01962 -12.91778 -12.76360 -12.53307 -12.15362 -12.06225 -11.65258 -11.34580 -11.11655 -10.70112 -10.24642 -9.57235 -8.89307 -8.37073 -5.94373 0.57098 0.82350 1.42634 1.44828 1.55497 2.20184 2.86178 2.90084 3.41025 3.64355 3.81492 4.23030 4.40858 4.54857 4.61412 4.76450 4.80175 4.85751 4.89700 4.97058 5.01489 5.14182 5.19675 5.26142 5.30221 5.34568 5.59881 5.70535 5.89551 6.18924 6.43419 6.76682 7.30821 7.50808 7.93978 8.62448 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.011364 C = 0.008695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.148516 B = 2463.240264 C = 3219.582454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.178 3.822 3 C -0.323 4.323 4 C 0.374 3.626 5 N -0.416 5.416 6 C -0.340 4.340 7 H 0.090 0.910 8 C 0.000 4.000 9 N -0.879 5.879 10 Si 0.990 3.010 11 H -0.262 1.262 12 H -0.274 1.274 13 H -0.278 1.278 14 C 0.156 3.844 15 C -0.157 4.157 16 C -0.133 4.133 17 N -0.604 5.604 18 C 0.316 3.684 19 N -0.614 5.614 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.123 0.877 24 H 0.274 0.726 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -3.253 2.495 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 C -0.353 4.353 4 C 0.129 3.871 5 N -0.108 5.108 6 C -0.469 4.469 7 H 0.108 0.892 8 C -0.204 4.204 9 N -0.514 5.514 10 Si 0.814 3.186 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.203 1.203 14 C 0.052 3.948 15 C -0.215 4.215 16 C -0.191 4.191 17 N -0.332 5.332 18 C 0.025 3.975 19 N -0.340 5.340 20 H 0.104 0.896 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.141 0.859 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.545 -3.646 2.351 4.605 hybrid contribution -0.352 1.790 -0.048 1.824 sum -1.896 -1.856 2.304 3.514 Atomic orbital electron populations 1.20678 0.86627 1.03864 1.03633 1.21689 0.98176 0.87569 0.88649 1.21808 0.94041 1.00152 1.19347 1.19134 0.89183 0.87110 0.91667 1.42825 1.04664 1.01503 1.61819 1.19760 1.10864 0.84124 1.32118 0.89198 1.26207 0.96908 1.03536 0.93760 1.70157 1.28555 1.32049 1.20632 0.84914 0.78484 0.76854 0.78396 1.18546 1.19952 1.20334 1.20852 0.79740 0.99609 0.94572 1.22203 1.00670 1.01969 0.96651 1.21826 1.00064 1.00175 0.97046 1.67991 1.40949 0.97771 1.26524 1.24967 0.87264 0.96378 0.88871 1.68196 1.10164 1.29631 1.26030 0.89568 0.89706 0.89903 0.85939 0.91677 0.90376 0.90521 0.91084 0.94889 0.95021 0.92085 0.92157 0.77469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 10.22 71.24 0.73 -1.86 16 2 C 0.18 6.99 6.82 42.44 0.29 7.28 16 3 C -0.32 -14.55 9.01 22.60 0.20 -14.34 16 4 C 0.37 18.06 6.75 133.16 0.90 18.96 16 5 N -0.42 -21.02 2.60 -494.84 -1.28 -22.31 16 6 C -0.34 -17.53 8.66 84.04 0.73 -16.80 16 7 H 0.09 4.57 6.76 -2.91 -0.02 4.55 16 8 C 0.00 0.02 4.85 84.88 0.41 0.43 16 9 N -0.88 -45.41 10.68 21.65 0.23 -45.18 16 10 Si 0.99 39.28 29.59 68.60 2.03 41.31 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 13 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 14 C 0.16 7.29 2.30 44.99 0.10 7.39 16 15 C -0.16 -6.32 9.14 71.98 0.66 -5.66 16 16 C -0.13 -5.92 9.01 71.98 0.65 -5.27 16 17 N -0.60 -26.48 5.72 -197.55 -1.13 -27.61 16 18 C 0.32 12.21 12.28 180.90 2.22 14.44 16 19 N -0.61 -24.22 10.37 -188.30 -1.95 -26.17 16 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 22 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 23 H 0.12 5.54 6.56 -2.91 -0.02 5.52 16 24 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 25 H 0.08 3.98 5.82 -2.39 -0.01 3.96 16 26 H 0.08 3.15 5.88 -2.39 -0.01 3.13 16 27 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.56 7.61 -2.39 -0.02 1.54 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 2.68 6.10 -2.39 -0.01 2.67 16 32 H 0.21 6.19 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -58.20 263.22 5.90 -52.30 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.11 Total: 23.09 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.89 Total: 4.56 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.14 Total: -121.27 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -58.20 5.90 -52.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542182.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.432 kcal (2) G-P(sol) polarization free energy of solvation -58.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds