Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00309 * 2 1 4 4 H 1.09006 * 109.47015 * 41.47190 * 3 2 1 5 5 C 1.50696 * 109.47312 * 161.47035 * 3 2 1 6 6 H 1.08008 * 119.99977 * 120.00437 * 5 3 2 7 7 C 1.37876 * 119.99955 * 299.99957 * 5 3 2 8 8 N 1.31515 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99956 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47245 * 119.99861 * 9 7 5 12 12 H 1.48499 * 109.46984 * 239.99948 * 9 7 5 13 13 C 1.50705 * 109.47200 * 281.47294 * 3 2 1 14 14 C 1.38169 * 120.02628 * 333.10284 * 13 3 2 15 15 C 1.38241 * 120.05575 * 179.97438 * 14 13 3 16 16 C 1.38286 * 120.11096 * 359.97438 * 15 14 13 17 17 C 1.38126 * 120.05690 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02907 * 153.08014 * 13 3 2 19 19 O 1.35902 * 120.05399 * 359.97438 * 18 13 3 20 20 C 1.42897 * 116.99550 * 180.02562 * 19 18 13 21 21 H 1.09001 * 109.47171 * 304.95376 * 1 2 3 22 22 H 1.09002 * 109.47123 * 64.95487 * 1 2 3 23 23 H 1.09004 * 109.47418 * 184.95328 * 1 2 3 24 24 H 1.00900 * 110.99780 * 236.04454 * 2 1 3 25 25 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 26 26 H 1.07999 * 119.96859 * 359.95887 * 14 13 3 27 27 H 1.07998 * 119.94102 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.97281 * 180.27377 * 16 15 14 29 29 H 1.07998 * 120.03014 * 179.97438 * 17 16 15 30 30 H 1.08993 * 109.47953 * 300.00134 * 20 19 18 31 31 H 1.09007 * 109.47247 * 60.00843 * 20 19 18 32 32 H 1.09005 * 109.47088 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.4068 1.9865 0.6806 5 6 3.4331 1.3575 0.4515 6 1 4.2087 1.7250 -0.2043 7 6 3.7584 0.8759 1.7018 8 7 2.8141 0.4280 2.5001 9 14 5.5405 0.8594 2.2617 10 1 6.4025 1.4120 1.1862 11 1 5.6825 1.6883 3.4856 12 1 5.9532 -0.5359 2.5583 13 6 1.9117 1.9416 -1.3925 14 6 1.9418 1.0995 -2.4875 15 6 1.8645 1.6219 -3.7650 16 6 1.7563 2.9880 -3.9505 17 6 1.7257 3.8341 -2.8592 18 6 1.8038 3.3123 -1.5759 19 8 1.7729 4.1426 -0.5004 20 6 1.6599 5.5423 -0.7646 21 1 -0.3633 0.5888 0.8423 22 1 -0.3633 0.4350 -0.9311 23 1 -0.3634 -1.0238 0.0887 24 1 1.8305 -0.5262 -0.7814 25 1 3.0430 0.0895 3.3799 26 1 2.0261 0.0323 -2.3451 27 1 1.8878 0.9620 -4.6196 28 1 1.6915 3.3934 -4.9494 29 1 1.6416 4.9009 -3.0046 30 1 2.5105 5.8692 -1.3626 31 1 0.7363 5.7357 -1.3104 32 1 1.6460 6.0900 0.1777 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -0.295163 kcal Electronic energy + Delta-G solvation = -15263.883748 eV Core-core repulsion = 12804.236178 eV Total energy + Delta-G solvation = -2459.647570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64523 -37.01863 -35.14122 -31.95193 -30.37356 -29.55862 -27.11351 -26.51457 -23.68026 -22.73762 -21.35867 -19.86320 -17.56458 -16.46554 -15.64746 -15.22551 -15.13860 -14.38032 -13.98186 -13.80528 -13.24293 -12.89362 -12.55157 -12.21222 -11.89203 -11.64977 -11.45518 -11.03599 -10.86358 -10.77711 -10.61747 -10.39600 -10.22670 -9.57870 -9.16158 -8.32963 -8.15556 -7.41946 -6.85660 -5.76871 -3.88975 1.93683 2.06551 3.39462 3.47148 3.51541 3.89204 4.37474 4.60589 5.24796 5.33073 5.40854 5.44090 5.47904 5.61287 5.77617 5.85220 6.06236 6.13418 6.21585 6.36519 6.44845 6.67696 6.81540 6.89684 6.93059 7.10649 7.41551 7.49297 8.02396 8.04761 8.35197 8.68576 8.88366 9.22221 9.77132 11.27810 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.010694 C = 0.009415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.471987 B = 2617.679588 C = 2973.348115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.652 5.652 3 C 0.259 3.741 4 H 0.053 0.947 5 C -0.513 4.513 6 H 0.052 0.948 7 C 0.084 3.916 8 N -0.851 5.851 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.285 1.285 13 C -0.096 4.096 14 C -0.096 4.096 15 C -0.158 4.158 16 C -0.110 4.110 17 C -0.215 4.215 18 C 0.126 3.874 19 O -0.296 6.296 20 C 0.029 3.971 21 H 0.054 0.946 22 H -0.005 1.005 23 H 0.043 0.957 24 H 0.314 0.686 25 H 0.254 0.746 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 5.589 -9.002 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.282 5.282 3 C 0.151 3.849 4 H 0.071 0.929 5 C -0.552 4.552 6 H 0.070 0.930 7 C -0.122 4.122 8 N -0.486 5.486 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.177 4.177 16 C -0.129 4.129 17 C -0.234 4.234 18 C 0.080 3.920 19 O -0.208 6.208 20 C -0.067 4.067 21 H 0.073 0.927 22 H 0.013 0.987 23 H 0.062 0.938 24 H 0.133 0.867 25 H 0.064 0.936 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.476 5.376 -7.900 10.168 hybrid contribution 0.778 0.501 -0.871 1.271 sum -2.698 5.877 -8.771 10.897 Atomic orbital electron populations 1.22095 0.91815 0.99529 0.98156 1.60999 1.03536 1.16314 1.47313 1.18231 0.96662 0.84980 0.85032 0.92913 1.20792 0.90850 1.43376 1.00207 0.93009 1.24899 0.96272 0.94543 0.96460 1.70095 1.31331 1.39404 1.07766 0.86709 0.86174 0.77473 0.78530 1.19976 1.21224 1.21123 1.21030 0.97958 0.90272 1.00566 1.20824 0.99458 0.99705 0.91487 1.20905 1.04934 0.95010 0.96831 1.20658 1.01294 0.93480 0.97436 1.21121 1.10208 0.99628 0.92397 1.18921 0.97076 0.90539 0.85479 1.86273 1.87936 1.16313 1.30288 1.22949 1.00156 0.80920 1.02675 0.92690 0.98686 0.93772 0.86738 0.93640 0.85878 0.86938 0.86986 0.86487 0.93324 0.93598 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.45 60.06 0.63 1.35 16 2 N -0.65 -15.78 5.75 -116.49 -0.67 -16.45 16 3 C 0.26 6.65 1.82 -70.02 -0.13 6.53 16 4 H 0.05 1.53 7.32 -51.93 -0.38 1.15 16 5 C -0.51 -14.52 8.75 -34.44 -0.30 -14.82 16 6 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.08 2.40 5.39 -17.82 -0.10 2.30 16 8 N -0.85 -25.11 12.77 55.43 0.71 -24.41 16 9 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C -0.10 -2.13 4.51 -104.47 -0.47 -2.61 16 14 C -0.10 -1.88 9.04 -39.61 -0.36 -2.24 16 15 C -0.16 -2.66 10.04 -39.56 -0.40 -3.05 16 16 C -0.11 -1.77 10.04 -39.61 -0.40 -2.16 16 17 C -0.21 -3.70 9.04 -39.43 -0.36 -4.05 16 18 C 0.13 2.60 6.66 -39.22 -0.26 2.34 16 19 O -0.30 -6.10 9.60 -19.43 -0.19 -6.29 16 20 C 0.03 0.41 9.81 101.05 0.99 1.40 16 21 H 0.05 1.22 7.96 -51.93 -0.41 0.80 16 22 H -0.01 -0.10 7.70 -51.93 -0.40 -0.50 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.31 7.05 6.31 -39.29 -0.25 6.80 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.12 2.29 6.00 -52.49 -0.31 1.98 16 27 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.68 6.30 -52.49 -0.33 1.34 16 30 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.05 0.57 7.66 -51.92 -0.40 0.17 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -31.32 269.89 -6.36 -37.68 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.11 Total: 3.60 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.15 Total: -15.01 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.04 Total: -40.85 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.19 Total: -6.29 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.32 -6.36 -37.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.387 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds