Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99964 * 2 1 4 4 H 1.09000 * 109.46925 * 316.99851 * 3 2 1 5 5 C 1.50702 * 109.47029 * 196.99632 * 3 2 1 6 6 H 1.07994 * 120.00041 * 243.94237 * 5 3 2 7 7 C 1.37881 * 119.99580 * 63.94081 * 5 3 2 8 8 N 1.31512 * 119.99527 * 188.05755 * 7 5 3 9 9 Si 1.86794 * 120.00421 * 8.05677 * 7 5 3 10 10 H 1.48503 * 109.47012 * 92.84080 * 9 7 5 11 11 H 1.48498 * 109.47279 * 212.84084 * 9 7 5 12 12 H 1.48497 * 109.47199 * 332.84526 * 9 7 5 13 13 C 1.50699 * 109.46809 * 76.99668 * 3 2 1 14 14 C 1.38164 * 120.02890 * 26.77850 * 13 3 2 15 15 C 1.38242 * 120.05738 * 179.70012 * 14 13 3 16 16 C 1.38295 * 120.10888 * 0.02562 * 15 14 13 17 17 C 1.38123 * 120.05680 * 0.02562 * 16 15 14 18 18 C 1.38714 * 120.02375 * 206.49906 * 13 3 2 19 19 O 1.35892 * 120.05930 * 0.25455 * 18 13 3 20 20 C 1.42892 * 117.00449 * 180.02562 * 19 18 13 21 21 H 1.09001 * 109.47419 * 174.59635 * 1 2 3 22 22 H 1.08995 * 109.47150 * 294.59651 * 1 2 3 23 23 H 1.08997 * 109.47157 * 54.59448 * 1 2 3 24 24 H 1.00900 * 110.99995 * 123.95936 * 2 1 3 25 25 H 0.96995 * 120.00162 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.97140 * 359.72016 * 14 13 3 27 27 H 1.08001 * 119.95087 * 179.97438 * 15 14 13 28 28 H 1.07997 * 119.97024 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.02922 * 179.97438 * 17 16 15 30 30 H 1.09003 * 109.47244 * 300.00207 * 20 19 18 31 31 H 1.09003 * 109.47310 * 60.00001 * 20 19 18 32 32 H 1.09000 * 109.47585 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.4240 1.9800 -0.7009 5 6 3.4440 1.3535 -0.4153 6 1 4.2089 1.6676 0.2794 7 6 3.7927 0.9360 -1.6823 8 7 5.0593 0.7685 -1.9940 9 14 2.4662 0.6082 -2.9559 10 1 2.2364 1.8363 -3.7586 11 1 2.9009 -0.4941 -3.8510 12 1 1.2066 0.2220 -2.2707 13 6 1.8770 1.9549 1.3844 14 6 1.8773 1.1232 2.4876 15 6 1.7749 1.6582 3.7582 16 6 1.6713 3.0267 3.9284 17 6 1.6695 3.8624 2.8287 18 6 1.7734 3.3279 1.5524 19 8 1.7733 4.1482 0.4689 20 6 1.6640 5.5511 0.7173 21 1 -0.3634 -1.0231 -0.0968 22 1 -0.3633 0.4277 0.9344 23 1 -0.3633 0.5954 -0.8376 24 1 1.8306 -0.5262 0.7813 25 1 5.3047 0.4752 -2.8854 26 1 1.9579 0.0541 2.3573 27 1 1.7749 1.0064 4.6193 28 1 1.5919 3.4423 4.9220 29 1 1.5882 4.9311 2.9621 30 1 0.7295 5.7559 1.2397 31 1 2.5029 5.8778 1.3318 32 1 1.6758 6.0899 -0.2302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259630540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = 2.796048 kcal Electronic energy + Delta-G solvation = -15333.225753 eV Core-core repulsion = 12873.712227 eV Total energy + Delta-G solvation = -2459.513525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.76157 -37.16149 -35.44428 -32.09822 -30.55668 -29.65430 -27.47410 -26.73573 -23.75299 -22.78781 -21.46629 -19.83410 -17.71459 -16.89821 -15.73765 -15.33056 -15.21506 -14.43261 -14.11896 -13.93177 -13.36950 -12.91572 -12.69063 -12.60487 -12.16669 -11.87490 -11.58035 -11.20298 -10.92944 -10.69612 -10.61541 -10.43327 -10.02556 -9.69882 -9.18853 -8.41709 -8.24185 -7.50885 -7.29226 -5.93049 -3.97522 1.85306 1.97998 3.53336 3.60388 3.80668 3.81434 4.30784 4.72321 5.15407 5.18440 5.29389 5.37924 5.44075 5.53142 5.71965 5.73497 5.88947 5.98333 6.04172 6.13796 6.20758 6.49095 6.52093 6.72091 6.82797 6.93749 7.10605 7.30761 7.73874 7.95714 8.27858 8.33271 8.69760 9.09433 9.73091 11.17537 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.011358 C = 0.009953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.208502 B = 2464.720796 C = 2812.669873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.681 5.681 3 C 0.225 3.775 4 H 0.051 0.949 5 C -0.501 4.501 6 H 0.068 0.932 7 C 0.090 3.910 8 N -0.899 5.899 9 Si 0.882 3.118 10 H -0.295 1.295 11 H -0.298 1.298 12 H -0.229 1.229 13 C -0.091 4.091 14 C -0.093 4.093 15 C -0.158 4.158 16 C -0.106 4.106 17 C -0.213 4.213 18 C 0.129 3.871 19 O -0.298 6.298 20 C 0.029 3.971 21 H 0.050 0.950 22 H 0.008 0.992 23 H 0.054 0.946 24 H 0.328 0.672 25 H 0.262 0.738 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 5.043 8.409 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.313 5.313 3 C 0.118 3.882 4 H 0.069 0.931 5 C -0.539 4.539 6 H 0.086 0.914 7 C -0.114 4.114 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.223 1.223 11 H -0.224 1.224 12 H -0.151 1.151 13 C -0.093 4.093 14 C -0.111 4.111 15 C -0.176 4.176 16 C -0.124 4.124 17 C -0.232 4.232 18 C 0.083 3.917 19 O -0.211 6.211 20 C -0.067 4.067 21 H 0.069 0.931 22 H 0.027 0.973 23 H 0.073 0.927 24 H 0.148 0.852 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.053 4.853 7.377 12.646 hybrid contribution -0.617 0.395 0.469 0.870 sum -9.670 5.248 7.846 13.513 Atomic orbital electron populations 1.22174 0.91345 1.00148 0.98938 1.61512 1.04467 1.16696 1.48596 1.18584 0.97324 0.84821 0.87508 0.93144 1.20639 0.89013 1.45008 0.99269 0.91384 1.24890 0.95187 0.92848 0.98461 1.69965 1.16837 1.46120 1.20733 0.86772 0.85442 0.76726 0.80091 1.22262 1.22435 1.15147 1.20534 0.99040 0.90339 0.99431 1.20792 0.99194 0.99636 0.91481 1.20908 1.04828 0.94990 0.96888 1.20693 1.00771 0.93507 0.97477 1.21126 1.10024 0.99738 0.92332 1.18878 0.96808 0.90479 0.85523 1.86234 1.87916 1.16647 1.30294 1.22966 1.00277 0.80554 1.02898 0.93123 0.97309 0.92734 0.85202 0.92885 0.85846 0.86766 0.86814 0.86314 0.93534 0.93106 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.79 60.07 0.59 1.03 16 2 N -0.68 -14.88 4.46 -116.49 -0.52 -15.40 16 3 C 0.23 5.42 1.26 -70.01 -0.09 5.33 16 4 H 0.05 1.29 6.32 -51.93 -0.33 0.96 16 5 C -0.50 -14.39 9.26 -34.44 -0.32 -14.71 16 6 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 7 C 0.09 2.65 5.46 -17.82 -0.10 2.56 16 8 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 9 Si 0.88 22.65 26.84 -169.99 -4.56 18.09 16 10 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 11 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 12 H -0.23 -5.53 4.71 56.52 0.27 -5.26 16 13 C -0.09 -1.95 4.48 -104.47 -0.47 -2.42 16 14 C -0.09 -1.73 8.89 -39.61 -0.35 -2.09 16 15 C -0.16 -2.55 10.04 -39.56 -0.40 -2.95 16 16 C -0.11 -1.64 10.04 -39.60 -0.40 -2.04 16 17 C -0.21 -3.56 9.04 -39.43 -0.36 -3.92 16 18 C 0.13 2.59 6.66 -39.21 -0.26 2.33 16 19 O -0.30 -5.97 9.60 -19.40 -0.19 -6.16 16 20 C 0.03 0.40 9.81 101.05 0.99 1.39 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.01 0.15 7.54 -51.93 -0.39 -0.24 16 23 H 0.05 1.04 7.42 -51.93 -0.39 0.65 16 24 H 0.33 6.71 6.38 -39.29 -0.25 6.46 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.12 2.17 6.02 -52.49 -0.32 1.85 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.64 6.30 -52.48 -0.33 1.31 16 30 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -32.58 262.52 -5.87 -38.45 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.18 Total: 3.90 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.16 Total: -15.47 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.25 Total: -42.76 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.19 Total: -6.16 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.56 Total: 18.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.58 -5.87 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.246 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds