Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99964 * 2 1 4 4 H 1.09000 * 109.46925 * 316.99851 * 3 2 1 5 5 C 1.50702 * 109.47029 * 196.99632 * 3 2 1 6 6 H 1.07994 * 120.00041 * 243.94237 * 5 3 2 7 7 C 1.37881 * 119.99580 * 63.94081 * 5 3 2 8 8 N 1.31512 * 119.99527 * 188.05755 * 7 5 3 9 9 Si 1.86794 * 120.00421 * 8.05677 * 7 5 3 10 10 H 1.48503 * 109.47012 * 92.84080 * 9 7 5 11 11 H 1.48498 * 109.47279 * 212.84084 * 9 7 5 12 12 H 1.48497 * 109.47199 * 332.84526 * 9 7 5 13 13 C 1.50699 * 109.46809 * 76.99668 * 3 2 1 14 14 C 1.38164 * 120.02890 * 26.77850 * 13 3 2 15 15 C 1.38242 * 120.05738 * 179.70012 * 14 13 3 16 16 C 1.38295 * 120.10888 * 0.02562 * 15 14 13 17 17 C 1.38123 * 120.05680 * 0.02562 * 16 15 14 18 18 C 1.38714 * 120.02375 * 206.49906 * 13 3 2 19 19 O 1.35892 * 120.05930 * 0.25455 * 18 13 3 20 20 C 1.42892 * 117.00449 * 180.02562 * 19 18 13 21 21 H 1.09001 * 109.47419 * 174.59635 * 1 2 3 22 22 H 1.08995 * 109.47150 * 294.59651 * 1 2 3 23 23 H 1.08997 * 109.47157 * 54.59448 * 1 2 3 24 24 H 1.00900 * 110.99995 * 123.95936 * 2 1 3 25 25 H 0.96995 * 120.00162 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.97140 * 359.72016 * 14 13 3 27 27 H 1.08001 * 119.95087 * 179.97438 * 15 14 13 28 28 H 1.07997 * 119.97024 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.02922 * 179.97438 * 17 16 15 30 30 H 1.09003 * 109.47244 * 300.00207 * 20 19 18 31 31 H 1.09003 * 109.47310 * 60.00001 * 20 19 18 32 32 H 1.09000 * 109.47585 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.4240 1.9800 -0.7009 5 6 3.4440 1.3535 -0.4153 6 1 4.2089 1.6676 0.2794 7 6 3.7927 0.9360 -1.6823 8 7 5.0593 0.7685 -1.9940 9 14 2.4662 0.6082 -2.9559 10 1 2.2364 1.8363 -3.7586 11 1 2.9009 -0.4941 -3.8510 12 1 1.2066 0.2220 -2.2707 13 6 1.8770 1.9549 1.3844 14 6 1.8773 1.1232 2.4876 15 6 1.7749 1.6582 3.7582 16 6 1.6713 3.0267 3.9284 17 6 1.6695 3.8624 2.8287 18 6 1.7734 3.3279 1.5524 19 8 1.7733 4.1482 0.4689 20 6 1.6640 5.5511 0.7173 21 1 -0.3634 -1.0231 -0.0968 22 1 -0.3633 0.4277 0.9344 23 1 -0.3633 0.5954 -0.8376 24 1 1.8306 -0.5262 0.7813 25 1 5.3047 0.4752 -2.8854 26 1 1.9579 0.0541 2.3573 27 1 1.7749 1.0064 4.6193 28 1 1.5919 3.4423 4.9220 29 1 1.5882 4.9311 2.9621 30 1 0.7295 5.7559 1.2397 31 1 2.5029 5.8778 1.3318 32 1 1.6758 6.0899 -0.2302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259630540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = -20.367319 kcal Electronic energy + Delta-G solvation = -15334.230192 eV Core-core repulsion = 12873.712227 eV Total energy + Delta-G solvation = -2460.517964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14288 -38.59597 -37.03247 -34.29059 -32.02324 -30.98428 -29.22824 -27.98563 -25.51487 -24.39765 -22.80091 -21.47703 -19.24743 -18.83863 -17.17154 -16.76163 -16.54994 -16.37174 -15.64482 -15.27699 -14.86795 -14.73490 -14.35961 -14.15557 -13.61309 -13.31858 -13.05264 -12.68491 -12.63383 -12.47800 -12.01537 -11.90789 -11.71216 -11.47765 -11.34023 -10.64990 -9.65208 -8.99478 -8.92028 -8.20927 -6.28382 0.50027 0.62719 1.46537 1.49265 1.76027 2.56393 2.56475 2.94636 3.11108 3.89265 3.98263 4.00458 4.27137 4.33506 4.41122 4.56154 4.59088 4.60299 4.71339 4.78696 4.81247 4.96319 5.05447 5.19615 5.45799 5.52103 5.63131 5.75537 6.00793 6.22647 6.45297 6.67112 6.82303 6.87316 7.45658 8.93471 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.011358 C = 0.009953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.208502 B = 2464.720796 C = 2812.669873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.695 5.695 3 C 0.239 3.761 4 H 0.032 0.968 5 C -0.498 4.498 6 H 0.020 0.980 7 C 0.032 3.968 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.297 1.297 11 H -0.300 1.300 12 H -0.206 1.206 13 C -0.135 4.135 14 C -0.102 4.102 15 C -0.157 4.157 16 C -0.096 4.096 17 C -0.212 4.212 18 C 0.106 3.894 19 O -0.338 6.338 20 C 0.020 3.980 21 H 0.077 0.923 22 H 0.020 0.980 23 H 0.047 0.953 24 H 0.335 0.665 25 H 0.262 0.738 26 H 0.126 0.874 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 5.437 10.258 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.327 5.327 3 C 0.131 3.869 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.038 0.962 7 C -0.166 4.166 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.225 1.225 11 H -0.227 1.227 12 H -0.127 1.127 13 C -0.137 4.137 14 C -0.120 4.120 15 C -0.175 4.175 16 C -0.114 4.114 17 C -0.231 4.231 18 C 0.060 3.940 19 O -0.252 6.252 20 C -0.075 4.075 21 H 0.095 0.905 22 H 0.039 0.961 23 H 0.066 0.934 24 H 0.155 0.845 25 H 0.071 0.929 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.302 5.254 9.250 15.521 hybrid contribution 0.097 0.364 0.057 0.381 sum -11.204 5.618 9.307 15.612 Atomic orbital electron populations 1.22186 0.88819 1.01786 0.99291 1.61202 1.06820 1.15380 1.49320 1.18090 0.93741 0.85854 0.89211 0.94968 1.20856 0.90961 1.43537 0.98255 0.96211 1.25747 0.97132 0.93063 1.00654 1.70102 1.19013 1.48507 1.21321 0.85794 0.83557 0.76190 0.77297 1.22469 1.22668 1.12716 1.20435 1.02891 0.91784 0.98607 1.20956 0.99298 0.99665 0.92110 1.21307 1.03396 0.96106 0.96693 1.21237 0.98023 0.93117 0.98974 1.21490 1.08792 1.01583 0.91216 1.19156 0.97639 0.90273 0.86905 1.86161 1.88235 1.19241 1.31543 1.23277 1.01892 0.77901 1.04399 0.90482 0.96116 0.93395 0.84483 0.92895 0.85588 0.83413 0.82638 0.83379 0.91047 0.92228 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.79 127.69 1.25 2.25 16 2 N -0.69 -29.87 4.46 -522.48 -2.33 -32.20 16 3 C 0.24 11.69 1.26 43.42 0.05 11.74 16 4 H 0.03 1.68 6.32 -2.39 -0.02 1.66 16 5 C -0.50 -29.78 9.26 25.60 0.24 -29.54 16 6 H 0.02 1.33 7.99 -2.91 -0.02 1.30 16 7 C 0.03 1.97 5.46 84.66 0.46 2.44 16 8 N -0.95 -61.85 13.96 21.45 0.30 -61.55 16 9 Si 0.95 47.89 26.84 68.60 1.84 49.73 16 10 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 11 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 12 H -0.21 -9.51 4.71 99.48 0.47 -9.04 16 13 C -0.13 -5.78 4.48 -19.77 -0.09 -5.86 16 14 C -0.10 -3.69 8.89 22.25 0.20 -3.49 16 15 C -0.16 -4.55 10.04 22.28 0.22 -4.33 16 16 C -0.10 -2.56 10.04 22.26 0.22 -2.34 16 17 C -0.21 -6.49 9.04 22.37 0.20 -6.29 16 18 C 0.11 4.19 6.66 22.51 0.15 4.34 16 19 O -0.34 -13.59 9.60 -92.33 -0.89 -14.47 16 20 C 0.02 0.52 9.81 113.37 1.11 1.63 16 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.02 0.67 7.54 -2.39 -0.02 0.65 16 23 H 0.05 1.72 7.42 -2.39 -0.02 1.71 16 24 H 0.33 13.53 6.38 -89.69 -0.57 12.96 16 25 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 26 H 0.13 4.32 6.02 -2.91 -0.02 4.30 16 27 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.15 3.53 6.30 -2.91 -0.02 3.51 16 30 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 31 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -73.85 262.52 3.26 -70.60 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.31 Total: 17.35 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.03 Total: -29.45 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -2.03 Total: -93.76 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.89 Total: -14.47 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.84 Total: 49.73 kcal Total: -73.85 3.26 -70.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259630540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.230 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds