Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47075 * 264.86077 * 3 2 1 5 5 H 1.48492 * 109.47394 * 24.86287 * 3 2 1 6 6 H 1.48502 * 109.47009 * 144.86283 * 3 2 1 7 7 C 1.37879 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99937 * 4.40003 * 7 2 1 9 9 C 1.50698 * 119.99902 * 184.40831 * 7 2 1 10 10 H 1.08999 * 109.44971 * 335.04515 * 9 7 2 11 11 C 1.53031 * 109.46331 * 95.01883 * 9 7 2 12 12 C 1.53123 * 109.27876 * 179.19246 * 11 9 7 13 13 C 1.53116 * 109.16073 * 302.34910 * 12 11 9 14 14 C 1.53034 * 109.27968 * 57.65163 * 13 12 11 15 15 N 1.46848 * 109.52533 * 300.81964 * 14 13 12 16 16 C 1.39985 * 111.00107 * 185.83571 * 15 14 13 17 17 C 1.40431 * 125.97338 * 56.04808 * 16 15 14 18 18 C 1.35247 * 107.86369 * 179.97438 * 17 16 15 19 19 N 1.34958 * 107.86217 * 0.02562 * 18 17 16 20 20 H 0.96999 * 125.97514 * 179.73288 * 19 18 17 21 21 N 1.31225 * 125.97942 * 236.04840 * 16 15 14 22 22 H 0.97009 * 119.99429 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.50756 * 59.25724 * 11 9 7 24 24 H 1.08998 * 109.54371 * 299.15722 * 11 9 7 25 25 H 1.09000 * 109.52464 * 182.43894 * 12 11 9 26 26 H 1.09004 * 109.57147 * 62.28814 * 12 11 9 27 27 H 1.08995 * 109.50429 * 297.71094 * 13 12 11 28 28 H 1.09005 * 109.50232 * 177.59040 * 13 12 11 29 29 H 1.08996 * 109.46336 * 180.79839 * 14 13 12 30 30 H 1.09002 * 109.46326 * 60.83544 * 14 13 12 31 31 H 1.08000 * 126.06935 * 0.02562 * 17 16 15 32 32 H 1.07996 * 126.07270 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3967 2.6815 0.5886 6 1 3.4882 1.4739 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4668 -2.1280 -0.0727 9 6 3.5082 -1.1961 0.0998 10 1 3.8980 -0.2486 -0.2722 11 6 3.9214 -1.3788 1.5619 12 6 5.4496 -1.4005 1.6564 13 6 5.9919 -2.5262 0.7715 14 6 5.5186 -2.3102 -0.6677 15 7 4.0507 -2.2982 -0.7050 16 6 3.5828 -2.2346 -2.0228 17 6 3.8987 -3.1334 -3.0546 18 6 3.2498 -2.7290 -4.1702 19 7 2.5494 -1.6173 -3.8617 20 1 1.9922 -1.1077 -4.4705 21 7 2.7724 -1.3248 -2.5101 22 1 -0.4850 0.8402 0.0004 23 1 3.5203 -2.3197 1.9387 24 1 3.5317 -0.5529 2.1569 25 1 5.7482 -1.5737 2.6903 26 1 5.8500 -0.4451 1.3169 27 1 5.6233 -3.4851 1.1358 28 1 7.0815 -2.5195 0.8011 29 1 5.8913 -3.1178 -1.2976 30 1 5.8991 -1.3575 -1.0360 31 1 4.5444 -3.9951 -2.9717 32 1 3.2863 -3.2097 -5.1365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259707817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = 83.793315 kcal Electronic energy + Delta-G solvation = -15669.651839 eV Core-core repulsion = 13245.943369 eV Total energy + Delta-G solvation = -2423.708469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.39470 -37.97790 -33.03231 -32.61391 -30.31737 -29.13485 -28.98841 -25.44780 -23.14598 -21.84352 -20.32881 -19.45078 -18.47536 -17.41910 -16.75758 -15.33317 -14.33294 -14.05549 -13.79907 -13.48042 -13.01827 -12.91542 -12.76643 -12.51014 -12.35349 -11.70297 -11.00489 -10.97713 -10.67088 -10.24467 -10.09625 -9.82847 -9.69918 -9.46777 -9.06574 -8.94457 -8.35996 -8.01470 -7.12736 -5.93552 -3.86758 2.72607 3.38230 3.42902 3.46715 3.56099 3.75245 4.55024 4.71729 5.33398 5.41044 5.44068 5.50598 5.70038 5.85867 6.00762 6.10410 6.17739 6.33943 6.38297 6.43928 6.49855 6.59529 6.69581 6.85031 6.94386 6.99893 7.37939 7.68486 7.83973 8.08073 8.35761 8.64453 8.85560 9.15441 9.72222 11.20433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.017169 C = 0.010566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.491658 B = 1630.460288 C = 2649.368121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.088 3.912 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.474 4.474 8 H 0.074 0.926 9 C 0.186 3.814 10 H 0.012 0.988 11 C -0.107 4.107 12 C -0.128 4.128 13 C -0.112 4.112 14 C 0.062 3.938 15 N -0.451 5.451 16 C 0.265 3.735 17 C -0.285 4.285 18 C 0.043 3.957 19 N -0.492 5.492 20 H 0.430 0.570 21 N -0.256 5.256 22 H 0.260 0.740 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.136 0.864 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 -3.735 -4.664 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.114 4.114 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.513 4.513 8 H 0.093 0.907 9 C 0.081 3.919 10 H 0.029 0.971 11 C -0.146 4.146 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.066 4.066 15 N -0.174 5.174 16 C 0.006 3.994 17 C -0.317 4.317 18 C -0.105 4.105 19 N -0.199 5.199 20 H 0.272 0.728 21 N -0.082 5.082 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.154 0.846 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.473 -3.028 -4.167 10.782 hybrid contribution 0.713 1.022 -0.920 1.549 sum 10.186 -2.006 -5.087 11.561 Atomic orbital electron populations 1.69896 1.06197 1.26452 1.51344 1.24770 0.94389 0.98159 0.94058 0.86984 0.80090 0.84436 0.78636 1.20212 1.21963 1.19436 1.20621 0.87643 0.94547 1.48498 0.90744 1.19785 0.96503 0.86688 0.88962 0.97054 1.21825 0.92111 1.01943 0.98720 1.21745 0.98382 0.97850 0.98640 1.21550 0.98845 0.99842 0.94719 1.22069 0.87390 0.99914 0.97207 1.59576 1.06339 1.47103 1.04365 1.20720 0.95947 0.92872 0.89844 1.21088 1.12422 1.05527 0.92616 1.22251 0.96833 0.91713 0.99688 1.46523 1.40228 1.23066 1.10102 0.72798 1.78382 1.21356 1.21337 0.87146 0.92987 0.91662 0.92262 0.92771 0.93149 0.91155 0.92255 0.91127 0.95338 0.84594 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 2 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 3 Si 0.87 22.66 26.98 -169.99 -4.59 18.08 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.69 6.84 56.52 0.39 -6.31 16 7 C -0.47 -13.67 6.65 -34.44 -0.23 -13.90 16 8 H 0.07 2.43 8.06 -52.48 -0.42 2.01 16 9 C 0.19 4.58 1.22 -68.88 -0.08 4.50 16 10 H 0.01 0.31 5.31 -51.93 -0.28 0.03 16 11 C -0.11 -2.32 5.36 -26.65 -0.14 -2.46 16 12 C -0.13 -2.23 6.00 -26.61 -0.16 -2.39 16 13 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16 14 C 0.06 1.11 5.34 -3.83 -0.02 1.09 16 15 N -0.45 -10.05 4.60 -166.58 -0.77 -10.81 16 16 C 0.27 5.97 6.12 -154.55 -0.95 5.02 16 17 C -0.28 -5.20 10.10 -39.82 -0.40 -5.60 16 18 C 0.04 0.68 11.98 -17.24 -0.21 0.47 16 19 N -0.49 -9.12 7.35 30.43 0.22 -8.90 16 20 H 0.43 6.54 8.96 -182.62 -1.64 4.90 16 21 N -0.26 -6.16 10.31 31.41 0.32 -5.83 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.11 7.45 -51.93 -0.39 0.72 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 2.13 7.92 -52.49 -0.42 1.71 16 32 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -33.76 259.63 -8.24 -42.00 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.67 Total: 1.55 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.45 Total: -12.68 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.56 Total: -52.87 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.59 Total: 18.08 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.76 -8.24 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259707817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.795 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds