Wall clock time and date at job start Mon Mar 30 2020 03:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99825 * 3 2 1 5 5 H 1.48496 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47328 * 119.99676 * 3 2 1 7 7 C 1.37875 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00087 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46282 * 60.02055 * 9 7 2 11 11 C 1.53031 * 109.46517 * 300.04828 * 9 7 2 12 12 C 1.53125 * 109.28072 * 180.80337 * 11 9 7 13 13 C 1.53118 * 109.15540 * 57.65619 * 12 11 9 14 14 C 1.53031 * 109.28194 * 302.34361 * 13 12 11 15 15 N 1.46850 * 109.46130 * 179.97438 * 9 7 2 16 16 C 1.39982 * 111.00446 * 305.85909 * 15 9 7 17 17 C 1.40424 * 125.97811 * 179.97438 * 16 15 9 18 18 C 1.35249 * 107.86520 * 180.02562 * 17 16 15 19 19 N 1.34964 * 107.86115 * 359.97438 * 18 17 16 20 20 H 0.97001 * 125.97209 * 180.02562 * 19 18 17 21 21 N 1.31226 * 125.97686 * 359.97135 * 16 15 9 22 22 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.50803 * 300.75138 * 11 9 7 24 24 H 1.09007 * 109.50012 * 60.82940 * 11 9 7 25 25 H 1.08999 * 109.52288 * 177.56553 * 12 11 9 26 26 H 1.09001 * 109.52266 * 297.69236 * 12 11 9 27 27 H 1.08996 * 109.50550 * 62.29332 * 13 12 11 28 28 H 1.09004 * 109.50114 * 182.36303 * 13 12 11 29 29 H 1.08999 * 109.46379 * 299.16594 * 14 13 12 30 30 H 1.09006 * 109.46653 * 179.19806 * 14 13 12 31 31 H 1.08006 * 126.07247 * 0.03395 * 17 16 15 32 32 H 1.07998 * 126.07053 * 180.25854 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6251 -2.5571 -0.8900 11 6 0.3700 -2.5792 1.2491 12 6 -0.3782 -3.9152 1.2551 13 6 0.6374 -5.0601 1.2064 14 6 1.5108 -4.9081 -0.0409 15 7 2.2056 -3.6151 0.0005 16 6 3.1135 -3.4988 -1.0586 17 6 4.1571 -4.3913 -1.3523 18 6 4.8030 -3.9287 -2.4468 19 7 4.1951 -2.7879 -2.8349 20 1 4.4461 -2.2382 -3.5937 21 7 3.1383 -2.5367 -1.9507 22 1 -0.4850 0.8400 -0.0004 23 1 0.9938 -2.5075 2.1401 24 1 -0.3483 -1.7593 1.2408 25 1 -0.9740 -3.9950 2.1644 26 1 -1.0324 -3.9702 0.3850 27 1 1.2654 -5.0275 2.0967 28 1 0.1098 -6.0131 1.1681 29 1 0.8837 -4.9547 -0.9313 30 1 2.2444 -5.7138 -0.0711 31 1 4.4007 -5.2882 -0.8020 32 1 5.6515 -4.3924 -2.9279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259707818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:53 Heat of formation + Delta-G solvation = 84.495801 kcal Electronic energy + Delta-G solvation = -15557.449289 eV Core-core repulsion = 13133.771281 eV Total energy + Delta-G solvation = -2423.678007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43717 -37.79075 -32.85496 -32.82060 -29.74955 -29.11151 -28.88137 -25.25744 -23.05062 -21.93968 -20.33483 -19.32235 -18.44377 -17.48628 -16.23639 -15.11132 -14.43512 -13.98511 -13.65686 -13.48847 -12.88789 -12.80565 -12.72212 -12.37576 -12.12201 -11.43736 -10.85544 -10.69929 -10.50459 -10.21227 -10.03060 -9.86548 -9.61574 -9.27290 -9.08324 -8.77314 -8.20337 -8.06296 -7.04220 -5.86531 -3.84362 2.64987 3.41481 3.44172 3.48324 3.52397 3.69780 4.53923 4.85433 5.39911 5.45314 5.57688 5.66472 5.83568 5.90786 6.18007 6.28524 6.34769 6.37159 6.49647 6.58001 6.76155 6.84135 6.96586 7.14723 7.28648 7.48649 7.84361 7.90689 8.00774 8.25494 8.36296 8.58650 8.80418 9.16428 9.75052 11.21300 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.014824 C = 0.009130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.888639 B = 1888.356478 C = 3065.949967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.470 4.470 8 H 0.060 0.940 9 C 0.221 3.779 10 H 0.010 0.990 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.112 4.112 14 C 0.067 3.933 15 N -0.456 5.456 16 C 0.268 3.732 17 C -0.285 4.285 18 C 0.044 3.956 19 N -0.495 5.495 20 H 0.430 0.570 21 N -0.268 5.268 22 H 0.258 0.742 23 H 0.044 0.956 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -8.946 -2.450 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.116 3.884 10 H 0.028 0.972 11 C -0.147 4.147 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.060 4.060 15 N -0.178 5.178 16 C 0.009 3.991 17 C -0.317 4.317 18 C -0.104 4.104 19 N -0.202 5.202 20 H 0.272 0.728 21 N -0.095 5.095 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.117 0.883 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.380 -7.749 -2.362 9.209 hybrid contribution 0.729 0.410 -0.776 1.142 sum 5.109 -7.339 -3.138 9.477 Atomic orbital electron populations 1.69859 1.05727 1.26257 1.52267 1.24798 0.94778 0.98768 0.95794 0.86592 0.79411 0.83150 0.78354 1.20621 1.21591 1.20554 1.20915 0.93055 0.89203 1.47749 0.92170 1.19322 0.88553 0.86548 0.93968 0.97217 1.21703 0.99175 0.95337 0.98456 1.21721 0.97449 0.96957 1.00145 1.21577 0.97497 0.97984 0.97972 1.22000 0.95946 0.90790 0.97300 1.59495 1.18988 1.04438 1.34892 1.20853 0.95490 0.92512 0.90256 1.21140 1.02105 1.05459 1.02971 1.22270 0.99631 0.90341 0.98147 1.46469 1.27081 1.20408 1.26277 0.72788 1.78365 1.05325 1.23091 1.02747 0.93196 0.93675 0.88295 0.93391 0.93188 0.91546 0.92626 0.95253 0.91553 0.84514 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.32 55.43 0.63 -25.69 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.90 22.59 29.54 -169.99 -5.02 17.57 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.47 -13.46 6.91 -34.44 -0.24 -13.70 16 8 H 0.06 1.80 6.80 -52.48 -0.36 1.44 16 9 C 0.22 5.78 1.57 -68.88 -0.11 5.67 16 10 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 11 C -0.11 -2.62 5.14 -26.65 -0.14 -2.76 16 12 C -0.13 -2.45 6.00 -26.61 -0.16 -2.61 16 13 C -0.11 -1.94 6.09 -26.65 -0.16 -2.10 16 14 C 0.07 1.28 5.34 -3.84 -0.02 1.26 16 15 N -0.46 -10.46 4.60 -166.58 -0.77 -11.23 16 16 C 0.27 6.00 5.86 -154.55 -0.91 5.10 16 17 C -0.28 -5.12 10.09 -39.82 -0.40 -5.52 16 18 C 0.04 0.66 11.98 -17.24 -0.21 0.46 16 19 N -0.49 -8.66 7.35 30.44 0.22 -8.44 16 20 H 0.43 5.95 8.96 -182.62 -1.64 4.31 16 21 N -0.27 -6.28 10.02 31.41 0.31 -5.96 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 23 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.10 2.65 6.09 -51.92 -0.32 2.33 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 31 H 0.14 2.13 7.91 -52.48 -0.41 1.71 16 32 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 258.99 15.07 3.90 3.90 Total: -1.00 -32.34 258.99 -8.78 -41.12 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.63 Total: 1.36 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.43 Total: -12.63 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.40 Total: -51.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.34 -8.78 -41.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259707818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.617 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds