Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46899 * 111.00063 * 2 1 4 4 C 1.46897 * 110.99650 * 123.95605 * 2 1 3 5 5 H 1.08995 * 109.47146 * 291.16284 * 4 2 1 6 6 C 1.50698 * 109.47345 * 51.17104 * 4 2 1 7 7 H 1.07999 * 120.00366 * 61.16461 * 6 4 2 8 8 C 1.37882 * 119.99665 * 241.16474 * 6 4 2 9 9 N 1.31515 * 119.99683 * 188.01707 * 8 6 4 10 10 Si 1.86800 * 119.99961 * 8.01976 * 8 6 4 11 11 H 1.48501 * 109.47267 * 275.26647 * 10 8 6 12 12 H 1.48501 * 109.47016 * 35.26550 * 10 8 6 13 13 H 1.48505 * 109.47140 * 155.26510 * 10 8 6 14 14 C 1.50707 * 109.46532 * 171.16602 * 4 2 1 15 15 C 1.38168 * 120.03248 * 334.18474 * 14 4 2 16 16 C 1.38245 * 120.05676 * 179.74800 * 15 14 4 17 17 C 1.38283 * 120.10695 * 0.55179 * 16 15 14 18 18 C 1.38122 * 120.06277 * 359.70112 * 17 16 15 19 19 C 1.38711 * 120.02331 * 154.46300 * 14 4 2 20 20 O 1.35899 * 120.05833 * 359.95135 * 19 14 4 21 21 H 1.08995 * 109.47227 * 291.84677 * 1 2 3 22 22 H 1.09000 * 109.47202 * 51.84387 * 1 2 3 23 23 H 1.08995 * 109.47025 * 171.84304 * 1 2 3 24 24 H 1.08991 * 109.47298 * 184.05422 * 3 2 1 25 25 H 1.09001 * 109.47395 * 304.05971 * 3 2 1 26 26 H 1.09004 * 109.47009 * 64.05405 * 3 2 1 27 27 H 0.97006 * 119.99346 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.96682 * 0.02562 * 15 14 4 29 29 H 1.07994 * 119.94109 * 180.25575 * 16 15 14 30 30 H 1.08007 * 119.96773 * 179.72155 * 17 16 15 31 31 H 1.08001 * 120.03009 * 180.02562 * 18 17 16 32 32 H 0.96698 * 113.99552 * 90.00092 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.7793 -0.2349 2.0644 6 6 1.3438 -2.1244 1.1731 7 1 1.4657 -2.8038 0.3425 8 6 0.5918 -2.4997 2.2662 9 7 0.1550 -3.7358 2.3706 10 14 0.1934 -1.2526 3.5986 11 1 1.3176 -1.1862 4.5666 12 1 -0.0083 0.0832 2.9820 13 1 -1.0458 -1.6633 4.3065 14 6 3.4862 -0.9279 0.9873 15 6 4.0628 -0.8905 -0.2678 16 6 5.4309 -1.0337 -0.4058 17 6 6.2243 -1.2261 0.7104 18 6 5.6522 -1.2696 1.9668 19 6 4.2800 -1.1204 2.1084 20 8 3.7147 -1.1623 3.3436 21 1 -0.3633 0.3824 0.9538 22 1 -0.3633 0.6349 -0.8081 23 1 -0.3633 -1.0172 -0.1458 24 1 3.0827 1.3433 -0.0726 25 1 1.5884 1.9169 -0.8514 26 1 1.7060 1.8717 0.9241 27 1 -0.3743 -3.9998 3.1395 28 1 3.4447 -0.7447 -1.1413 29 1 5.8801 -1.0000 -1.3873 30 1 7.2924 -1.3423 0.5995 31 1 6.2724 -1.4195 2.8382 32 1 3.4478 -2.0484 3.6241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259749072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -27.599394 kcal Electronic energy + Delta-G solvation = -15585.958914 eV Core-core repulsion = 13125.127343 eV Total energy + Delta-G solvation = -2460.831571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81462 -38.20365 -37.28372 -34.61859 -32.40145 -30.70951 -29.38339 -27.90042 -25.39371 -23.62496 -22.94666 -21.11785 -19.24718 -19.06420 -17.14505 -16.90075 -16.39863 -15.91986 -15.40063 -15.21412 -15.17787 -14.82426 -14.45332 -13.80208 -13.33841 -13.13322 -12.97765 -12.85867 -12.48978 -12.41782 -12.32941 -11.98954 -11.87896 -11.60657 -11.05752 -10.79295 -9.53735 -9.25631 -9.00536 -8.36375 -6.37840 0.50311 0.63890 1.28163 1.32344 1.38440 2.25827 2.82754 2.99597 3.41184 3.60115 4.21533 4.25470 4.33369 4.45959 4.54054 4.60130 4.67521 4.76497 4.85464 4.96804 5.00436 5.08246 5.21526 5.32146 5.44055 5.61542 5.73773 5.82132 6.10408 6.14736 6.36024 6.61118 6.71880 6.86930 7.27120 8.79303 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025800 B = 0.013679 C = 0.010959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.995657 B = 2046.437027 C = 2554.429119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.221 3.779 5 H 0.008 0.992 6 C -0.487 4.487 7 H 0.037 0.963 8 C 0.040 3.960 9 N -0.931 5.931 10 Si 0.924 3.076 11 H -0.251 1.251 12 H -0.272 1.272 13 H -0.292 1.292 14 C -0.089 4.089 15 C -0.103 4.103 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.153 4.153 19 C 0.073 3.927 20 O -0.511 6.511 21 H 0.001 0.999 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.003 0.997 27 H 0.268 0.732 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.698 7.503 -2.500 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.274 5.274 3 C -0.126 4.126 4 C 0.114 3.886 5 H 0.026 0.974 6 C -0.526 4.526 7 H 0.055 0.945 8 C -0.160 4.160 9 N -0.570 5.570 10 Si 0.750 3.250 11 H -0.175 1.175 12 H -0.197 1.197 13 H -0.219 1.219 14 C -0.090 4.090 15 C -0.122 4.122 16 C -0.150 4.150 17 C -0.137 4.137 18 C -0.171 4.171 19 C 0.028 3.972 20 O -0.322 6.322 21 H 0.019 0.981 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.843 7.753 -2.821 12.095 hybrid contribution -1.175 -0.055 1.632 2.012 sum 7.669 7.698 -1.189 10.931 Atomic orbital electron populations 1.22110 0.87814 1.01788 0.98634 1.62161 1.07921 1.12532 1.44747 1.22461 1.01014 0.89359 0.99786 1.18436 0.89113 0.92691 0.88375 0.97446 1.20727 1.29984 0.98517 1.03329 0.94482 1.25591 0.95059 0.96024 0.99323 1.70015 1.37474 1.18279 1.31250 0.86161 0.78369 0.79883 0.80584 1.17518 1.19749 1.21858 1.20616 0.95891 0.98836 0.93671 1.21080 0.95364 0.99302 0.96423 1.21475 0.92990 1.00444 1.00049 1.21264 1.01053 1.00184 0.91175 1.21531 0.93231 1.02886 0.99465 1.18663 0.91706 1.02737 0.84072 1.84671 1.81365 1.35079 1.31084 0.98054 0.90206 0.92553 0.91448 0.89764 0.97799 0.92211 0.85463 0.83331 0.82700 0.84305 0.75294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.85 9.10 127.69 1.16 3.01 16 2 N -0.55 -23.33 3.83 -932.22 -3.57 -26.90 16 3 C 0.02 0.77 9.11 127.69 1.16 1.94 16 4 C 0.22 10.51 1.37 43.42 0.06 10.57 16 5 H 0.01 0.41 4.36 -2.39 -0.01 0.40 16 6 C -0.49 -26.94 7.27 25.60 0.19 -26.75 16 7 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 8 C 0.04 2.23 5.47 84.66 0.46 2.69 16 9 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 10 Si 0.92 44.40 26.10 68.60 1.79 46.19 16 11 H -0.25 -11.45 6.98 99.48 0.69 -10.76 16 12 H -0.27 -13.06 5.76 99.48 0.57 -12.48 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 C -0.09 -3.82 4.30 -19.77 -0.09 -3.91 16 15 C -0.10 -3.85 7.91 22.25 0.18 -3.67 16 16 C -0.13 -3.89 10.04 22.28 0.22 -3.67 16 17 C -0.12 -3.30 10.04 22.25 0.22 -3.07 16 18 C -0.15 -4.98 9.99 22.37 0.22 -4.75 16 19 C 0.07 2.96 6.68 22.51 0.15 3.11 16 20 O -0.51 -21.32 12.02 -92.42 -1.11 -22.43 16 21 H 0.00 0.04 6.67 -2.39 -0.02 0.02 16 22 H 0.08 2.66 8.05 -2.39 -0.02 2.64 16 23 H 0.06 2.61 7.04 -2.39 -0.02 2.59 16 24 H 0.07 2.29 6.26 -2.39 -0.01 2.27 16 25 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 26 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 27 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 28 H 0.13 4.77 7.21 -2.91 -0.02 4.75 16 29 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.39 15.22 9.06 -74.06 -0.67 14.55 16 Total: -1.00 -64.45 262.44 1.66 -62.80 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.30 Total: 19.99 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.95 Total: -24.51 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.27 Total: -82.03 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -1.11 Total: -22.43 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.79 Total: 46.19 kcal Total: -64.45 1.66 -62.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259749072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.197 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds