Wall clock time and date at job start Mon Mar 30 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31140 * 125.96690 * 2 1 4 4 N 1.40379 * 108.29028 * 179.90584 * 3 2 1 5 5 H 0.96996 * 126.11976 * 180.23328 * 4 3 2 6 6 C 1.34048 * 107.77267 * 0.45366 * 4 3 2 7 7 C 1.35970 * 107.91423 * 359.64771 * 6 4 3 8 8 C 1.50806 * 123.40846 * 180.26140 * 7 6 4 9 9 H 1.09006 * 109.70519 * 256.59670 * 8 7 6 10 10 C 1.53000 * 109.70754 * 135.97560 * 8 7 6 11 11 C 1.50703 * 109.46719 * 174.99998 * 10 8 7 12 12 H 1.07994 * 120.00695 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99395 * 179.97438 * 11 10 8 14 14 N 1.31514 * 120.00070 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99865 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46856 * 90.00248 * 15 13 11 17 17 H 1.48494 * 109.47312 * 210.00092 * 15 13 11 18 18 H 1.48498 * 109.47166 * 330.00473 * 15 13 11 19 19 N 1.47291 * 108.25922 * 16.27180 * 8 7 6 20 20 C 1.46938 * 111.48710 * 308.69613 * 19 8 7 21 21 C 1.50875 * 128.92543 * 179.47794 * 6 4 3 22 22 H 1.09001 * 109.46953 * 269.68258 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.67856 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68487 * 1 2 3 25 25 H 1.08996 * 109.46772 * 294.99860 * 10 8 7 26 26 H 1.08994 * 109.46802 * 55.00112 * 10 8 7 27 27 H 0.96998 * 119.99702 * 179.97438 * 14 13 11 28 28 H 1.00894 * 110.99561 * 73.00730 * 19 8 7 29 29 H 1.08993 * 109.44867 * 311.52782 * 20 19 8 30 30 H 1.09011 * 109.43697 * 191.63124 * 20 19 8 31 31 H 1.09001 * 109.79610 * 315.51064 * 21 6 4 32 32 H 1.08997 * 109.79105 * 76.29645 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2773 1.0614 0.0000 4 7 3.6148 0.6351 0.0022 5 1 4.3975 1.2080 0.0059 6 6 3.6171 -0.7053 -0.0066 7 6 2.3240 -1.1257 -0.0063 8 6 1.9236 -2.5797 -0.0091 9 1 1.5957 -2.8687 -1.0077 10 6 0.7891 -2.8044 0.9926 11 6 0.3104 -4.2302 0.8977 12 1 0.7690 -4.9082 0.1932 13 6 -0.7133 -4.6691 1.7104 14 7 -1.2722 -3.8434 2.5680 15 14 -1.3073 -6.4362 1.5924 16 1 -0.5307 -7.2833 2.5331 17 1 -2.7485 -6.4986 1.9447 18 1 -1.1147 -6.9317 0.2059 19 7 3.0960 -3.3820 0.3799 20 6 4.2751 -3.0380 -0.4267 21 6 4.7924 -1.6512 -0.0191 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3634 0.8928 -0.5088 24 1 -0.3633 -0.8871 -0.5187 25 1 1.1516 -2.6092 2.0018 26 1 -0.0352 -2.1284 0.7654 27 1 -1.9926 -4.1521 3.1395 28 1 3.2905 -3.2838 1.3650 29 1 4.0026 -3.0279 -1.4819 30 1 5.0566 -3.7798 -0.2613 31 1 5.5348 -1.3080 -0.7396 32 1 5.2376 -1.6999 0.9746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:21 Heat of formation + Delta-G solvation = 64.656792 kcal Electronic energy + Delta-G solvation = -15228.322347 eV Core-core repulsion = 12803.784056 eV Total energy + Delta-G solvation = -2424.538291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20511 -36.82730 -33.94619 -32.42952 -30.41152 -29.56289 -27.77470 -26.78495 -23.76881 -22.58408 -20.87513 -19.64448 -18.72695 -16.92242 -16.12562 -14.99624 -14.63972 -14.40783 -14.22810 -13.41290 -13.21186 -12.80346 -12.58688 -12.30161 -12.05347 -11.90581 -11.59106 -11.02745 -10.88436 -10.76050 -10.45429 -10.23456 -10.04922 -9.35552 -8.98286 -8.85168 -8.23624 -7.87039 -7.68691 -5.86987 -3.85302 2.17117 3.12694 3.18340 3.41596 3.47667 3.51993 4.58229 4.81231 4.82759 5.15075 5.19190 5.37411 5.50696 5.53111 5.76356 5.91886 5.98715 6.14618 6.19721 6.27631 6.46225 6.52798 6.55430 6.98762 7.13497 7.56170 7.61079 7.77858 7.96610 8.06153 8.11172 8.19903 8.58446 9.21331 9.76634 11.24558 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034408 B = 0.008907 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.562954 B = 3142.810269 C = 3787.732390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.100 3.900 3 N -0.313 5.313 4 N -0.477 5.477 5 H 0.430 0.570 6 C 0.065 3.935 7 C -0.247 4.247 8 C 0.167 3.833 9 H 0.076 0.924 10 C 0.025 3.975 11 C -0.497 4.497 12 H 0.062 0.938 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.890 3.110 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.275 1.275 19 N -0.664 5.664 20 C 0.063 3.937 21 C -0.092 4.092 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.013 0.987 26 H 0.037 0.963 27 H 0.257 0.743 28 H 0.341 0.659 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 5.602 -5.156 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 N -0.138 5.138 4 N -0.184 5.184 5 H 0.272 0.728 6 C -0.064 4.064 7 C -0.259 4.259 8 C 0.057 3.943 9 H 0.093 0.907 10 C -0.012 4.012 11 C -0.536 4.536 12 H 0.080 0.920 13 C -0.148 4.148 14 N -0.542 5.542 15 Si 0.719 3.281 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.200 1.200 19 N -0.291 5.291 20 C -0.068 4.068 21 C -0.134 4.134 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.160 0.840 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.720 6.301 -5.422 12.790 hybrid contribution 0.471 -0.455 0.504 0.826 sum 10.191 5.846 -4.917 12.736 Atomic orbital electron populations 1.20350 0.86390 1.02812 1.03708 1.22059 0.97084 0.89984 0.97397 1.77415 0.86007 1.22251 1.28082 1.45804 1.07307 1.04566 1.60688 0.72753 1.20887 0.97385 0.84943 1.03190 1.21219 0.91102 0.99343 1.14282 1.20377 0.91453 0.81587 1.00934 0.90653 1.19352 0.91573 0.97478 0.92780 1.21223 1.16228 0.96158 1.19949 0.92012 1.24998 0.96875 0.97156 0.95727 1.69965 1.25715 1.34817 1.23674 0.86626 0.77569 0.85681 0.78252 1.20978 1.21645 1.19989 1.60657 1.03108 1.56855 1.08527 1.22097 0.93848 0.91728 0.99145 1.21207 0.93788 0.95884 1.02472 0.89876 0.92017 0.89241 0.96867 0.94464 0.93319 0.84049 0.91094 0.90419 0.90655 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 8.70 36.01 0.31 -0.99 16 2 C 0.10 1.92 7.11 -82.57 -0.59 1.33 16 3 N -0.31 -5.74 12.72 33.57 0.43 -5.31 16 4 N -0.48 -7.31 7.34 33.49 0.25 -7.06 16 5 H 0.43 4.90 8.96 -182.39 -1.63 3.27 16 6 C 0.07 1.05 7.17 -82.35 -0.59 0.46 16 7 C -0.25 -4.70 5.49 -105.07 -0.58 -5.28 16 8 C 0.17 3.44 2.70 -68.60 -0.19 3.26 16 9 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 10 C 0.03 0.63 4.33 -27.88 -0.12 0.51 16 11 C -0.50 -13.63 8.88 -34.44 -0.31 -13.94 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 14 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 N -0.66 -12.27 6.34 -107.29 -0.68 -12.95 16 20 C 0.06 0.89 6.54 -3.53 -0.02 0.86 16 21 C -0.09 -1.15 6.42 -27.53 -0.18 -1.33 16 22 H 0.08 1.52 8.01 -51.93 -0.42 1.10 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 25 H 0.01 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.04 0.94 4.77 -51.93 -0.25 0.70 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.34 6.39 8.53 -39.29 -0.34 6.06 16 29 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -31.30 263.45 -8.16 -39.46 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.49 Total: 4.78 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.35 Total: -13.74 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.73 Total: -51.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.30 -8.16 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.115 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds