Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47079 * 299.99648 * 3 2 1 6 6 H 1.48504 * 109.47349 * 60.00069 * 3 2 1 7 7 C 1.37869 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00114 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.45853 * 299.97691 * 9 7 2 11 11 C 1.53030 * 109.46126 * 59.94710 * 9 7 2 12 12 C 1.53119 * 109.28113 * 179.19485 * 11 9 7 13 13 C 1.53119 * 109.15763 * 302.35079 * 12 11 9 14 14 C 1.53031 * 109.28356 * 57.65141 * 13 12 11 15 15 N 1.46845 * 109.51898 * 300.81903 * 14 13 12 16 16 C 1.38505 * 110.99926 * 185.83762 * 15 14 13 17 17 N 1.31196 * 125.79300 * 235.92672 * 16 15 14 18 18 C 1.34388 * 109.30249 * 180.26894 * 17 16 15 19 19 C 1.34373 * 108.32275 * 359.75929 * 18 17 16 20 20 N 1.36028 * 125.78622 * 55.79012 * 16 15 14 21 21 H 0.97001 * 126.49813 * 0.02562 * 20 16 15 22 22 H 0.97002 * 120.00353 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.50679 * 299.13801 * 11 9 7 24 24 H 1.09002 * 109.50587 * 59.21242 * 11 9 7 25 25 H 1.09006 * 109.52162 * 62.24808 * 12 11 9 26 26 H 1.08993 * 109.52776 * 182.37578 * 12 11 9 27 27 H 1.09009 * 109.50307 * 177.59244 * 13 12 11 28 28 H 1.09002 * 109.49999 * 297.66532 * 13 12 11 29 29 H 1.08996 * 109.46319 * 180.80475 * 14 13 12 30 30 H 1.09001 * 109.46520 * 60.83619 * 14 13 12 31 31 H 1.07998 * 125.84038 * 179.75708 * 18 17 16 32 32 H 1.08003 * 126.53031 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6251 -2.5563 0.8923 11 6 0.3699 -2.5803 -1.2468 12 6 -0.3783 -3.9162 -1.2517 13 6 0.6372 -5.0611 -1.2020 14 6 1.5107 -4.9081 0.0452 15 7 2.2055 -3.6152 0.0020 16 6 3.1041 -3.4993 1.0497 17 7 3.1245 -2.5361 1.9401 18 6 4.1353 -2.7475 2.8002 19 6 4.7648 -3.8794 2.4422 20 7 4.1136 -4.3665 1.3313 21 1 4.3355 -5.1728 0.8399 22 1 -0.4851 0.8400 0.0004 23 1 -0.3488 -1.7608 -1.2390 24 1 0.9936 -2.5086 -2.1378 25 1 -1.0317 -3.9709 -0.3809 26 1 -0.9749 -3.9964 -2.1603 27 1 0.1096 -6.0141 -1.1621 28 1 1.2648 -5.0297 -2.0926 29 1 2.2442 -5.7137 0.0760 30 1 0.8836 -4.9539 0.9357 31 1 4.3970 -2.1157 3.6360 32 1 5.6187 -4.3229 2.9327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 74.075339 kcal Electronic energy + Delta-G solvation = -15625.314108 eV Core-core repulsion = 13201.184236 eV Total energy + Delta-G solvation = -2424.129872 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.17963 -37.92872 -32.91022 -32.63963 -31.61447 -29.45378 -27.57749 -25.24798 -23.16453 -21.79074 -20.52508 -19.90027 -18.58490 -17.82770 -16.11137 -14.98330 -14.59141 -14.24802 -13.81512 -13.59087 -13.11305 -12.97696 -12.76500 -12.42700 -12.27250 -11.65729 -10.85077 -10.70647 -10.52422 -10.28990 -9.97010 -9.79121 -9.51548 -9.18978 -9.02573 -8.79565 -8.56520 -8.11744 -6.88354 -5.81970 -3.77539 2.74001 3.44356 3.51121 3.53796 3.59506 3.99124 4.59185 4.82016 5.34528 5.48168 5.49818 5.61763 5.69388 5.88670 5.99486 6.14968 6.18538 6.26527 6.46423 6.61458 6.66676 6.79365 6.94213 7.14900 7.25656 7.40310 7.61233 7.92333 7.95743 8.26808 8.41092 8.62276 9.07338 9.21905 9.80461 11.26668 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.014828 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.407487 B = 1887.826467 C = 3032.939098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.458 4.458 8 H 0.061 0.939 9 C 0.235 3.765 10 H 0.017 0.983 11 C -0.109 4.109 12 C -0.126 4.126 13 C -0.111 4.111 14 C 0.061 3.939 15 N -0.460 5.460 16 C 0.417 3.583 17 N -0.467 5.467 18 C -0.021 4.021 19 C -0.095 4.095 20 N -0.592 5.592 21 H 0.407 0.593 22 H 0.256 0.744 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.158 0.842 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -10.213 0.656 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.497 4.497 8 H 0.080 0.920 9 C 0.131 3.869 10 H 0.035 0.965 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.067 4.067 15 N -0.184 5.184 16 C 0.063 3.937 17 N -0.190 5.190 18 C -0.170 4.170 19 C -0.226 4.226 20 N -0.201 5.201 21 H 0.244 0.756 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.176 0.824 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.755 -9.346 0.279 10.076 hybrid contribution 0.927 -0.207 0.469 1.059 sum 4.682 -9.553 0.747 10.664 Atomic orbital electron populations 1.69862 1.05702 1.26004 1.53049 1.24756 0.94788 0.98766 0.96011 0.86438 0.80086 0.83790 0.77012 1.20076 1.21588 1.21331 1.20918 0.93112 0.88852 1.46794 0.92044 1.19285 0.87774 0.85674 0.94160 0.96529 1.21753 0.99231 0.95449 0.98356 1.21729 0.97411 0.96773 1.00408 1.21563 0.97549 0.98315 0.97479 1.22068 0.96128 0.90224 0.98251 1.59005 1.18988 1.05319 1.35107 1.21410 0.91389 0.88004 0.92851 1.71342 1.21006 1.23253 1.03422 1.22316 0.96569 0.96920 1.01228 1.22295 1.04270 1.01352 0.94732 1.43410 1.26988 1.23625 1.26070 0.75627 0.93372 0.87869 0.93625 0.92982 0.93173 0.92477 0.91526 0.92585 0.94587 0.82424 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.32 55.43 0.63 -25.74 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 3 Si 0.90 22.82 29.54 -169.99 -5.02 17.80 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.46 -13.05 6.89 -34.44 -0.24 -13.28 16 8 H 0.06 1.85 6.79 -52.49 -0.36 1.49 16 9 C 0.24 6.03 1.55 -68.87 -0.11 5.92 16 10 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 11 C -0.11 -2.56 5.14 -26.65 -0.14 -2.70 16 12 C -0.13 -2.35 6.00 -26.61 -0.16 -2.51 16 13 C -0.11 -1.80 6.09 -26.65 -0.16 -1.96 16 14 C 0.06 1.08 5.38 -3.84 -0.02 1.06 16 15 N -0.46 -10.11 4.57 -168.47 -0.77 -10.88 16 16 C 0.42 9.11 6.64 -319.60 -2.12 6.99 16 17 N -0.47 -11.26 8.51 -13.92 -0.12 -11.38 16 18 C -0.02 -0.41 11.84 -17.80 -0.21 -0.62 16 19 C -0.09 -1.52 12.04 -16.29 -0.20 -1.71 16 20 N -0.59 -10.04 6.00 -13.15 -0.08 -10.11 16 21 H 0.41 5.44 8.64 -40.82 -0.35 5.09 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.10 2.70 6.09 -51.93 -0.32 2.39 16 24 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.83 7.60 -51.93 -0.39 0.43 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.16 2.63 8.06 -52.49 -0.42 2.21 16 32 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -31.99 258.67 -9.27 -41.25 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.36 Total: 2.49 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.45 Total: -7.32 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.34 Total: -58.12 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.99 -9.27 -41.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.329 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds