Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47079 * 299.99648 * 3 2 1 6 6 H 1.48504 * 109.47349 * 60.00069 * 3 2 1 7 7 C 1.37869 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00114 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.45853 * 299.97691 * 9 7 2 11 11 C 1.53030 * 109.46126 * 59.94710 * 9 7 2 12 12 C 1.53119 * 109.28113 * 179.19485 * 11 9 7 13 13 C 1.53119 * 109.15763 * 302.35079 * 12 11 9 14 14 C 1.53031 * 109.28356 * 57.65141 * 13 12 11 15 15 N 1.46845 * 109.51898 * 300.81903 * 14 13 12 16 16 C 1.38505 * 110.99926 * 185.83762 * 15 14 13 17 17 N 1.31196 * 125.79300 * 235.92672 * 16 15 14 18 18 C 1.34388 * 109.30249 * 180.26894 * 17 16 15 19 19 C 1.34373 * 108.32275 * 359.75929 * 18 17 16 20 20 N 1.36028 * 125.78622 * 55.79012 * 16 15 14 21 21 H 0.97001 * 126.49813 * 0.02562 * 20 16 15 22 22 H 0.97002 * 120.00353 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.50679 * 299.13801 * 11 9 7 24 24 H 1.09002 * 109.50587 * 59.21242 * 11 9 7 25 25 H 1.09006 * 109.52162 * 62.24808 * 12 11 9 26 26 H 1.08993 * 109.52776 * 182.37578 * 12 11 9 27 27 H 1.09009 * 109.50307 * 177.59244 * 13 12 11 28 28 H 1.09002 * 109.49999 * 297.66532 * 13 12 11 29 29 H 1.08996 * 109.46319 * 180.80475 * 14 13 12 30 30 H 1.09001 * 109.46520 * 60.83619 * 14 13 12 31 31 H 1.07998 * 125.84038 * 179.75708 * 18 17 16 32 32 H 1.08003 * 126.53031 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6251 -2.5563 0.8923 11 6 0.3699 -2.5803 -1.2468 12 6 -0.3783 -3.9162 -1.2517 13 6 0.6372 -5.0611 -1.2020 14 6 1.5107 -4.9081 0.0452 15 7 2.2055 -3.6152 0.0020 16 6 3.1041 -3.4993 1.0497 17 7 3.1245 -2.5361 1.9401 18 6 4.1353 -2.7475 2.8002 19 6 4.7648 -3.8794 2.4422 20 7 4.1136 -4.3665 1.3313 21 1 4.3355 -5.1728 0.8399 22 1 -0.4851 0.8400 0.0004 23 1 -0.3488 -1.7608 -1.2390 24 1 0.9936 -2.5086 -2.1378 25 1 -1.0317 -3.9709 -0.3809 26 1 -0.9749 -3.9964 -2.1603 27 1 0.1096 -6.0141 -1.1621 28 1 1.2648 -5.0297 -2.0926 29 1 2.2442 -5.7137 0.0760 30 1 0.8836 -4.9539 0.9357 31 1 4.3970 -2.1157 3.6360 32 1 5.6187 -4.3229 2.9327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 53.286621 kcal Electronic energy + Delta-G solvation = -15626.215574 eV Core-core repulsion = 13201.184236 eV Total energy + Delta-G solvation = -2425.031339 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.67996 -39.55626 -34.92269 -34.19335 -33.20386 -31.25560 -29.07002 -27.22676 -24.76763 -23.54953 -22.00078 -21.41887 -20.25660 -19.39831 -18.12927 -16.83679 -16.15705 -15.92994 -15.52447 -15.12582 -14.69444 -14.45419 -14.25892 -14.15729 -13.89858 -13.38550 -12.84462 -12.61627 -12.36297 -12.04514 -11.84870 -11.52055 -11.15030 -10.80674 -10.80282 -10.59491 -10.31079 -10.12886 -8.45040 -8.00337 -6.01403 1.32101 1.38910 1.40984 1.52818 2.11261 2.46233 2.50874 3.29231 3.34578 3.96000 4.10922 4.25618 4.35034 4.53979 4.57449 4.68517 4.73253 4.84253 4.99868 5.10424 5.15327 5.21886 5.28632 5.42562 5.61918 5.68494 5.78328 5.93616 6.22974 6.32387 6.48647 6.94244 7.05163 7.56099 7.61423 9.06785 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.014828 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.407487 B = 1887.826467 C = 3032.939098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.286 1.286 7 C -0.461 4.461 8 H 0.040 0.960 9 C 0.248 3.752 10 H -0.032 1.032 11 C -0.103 4.103 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.056 3.944 15 N -0.465 5.465 16 C 0.384 3.616 17 N -0.530 5.530 18 C -0.068 4.068 19 C -0.048 4.048 20 N -0.572 5.572 21 H 0.428 0.572 22 H 0.257 0.743 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.172 0.828 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -12.373 0.319 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.212 1.212 7 C -0.501 4.501 8 H 0.058 0.942 9 C 0.142 3.858 10 H -0.015 1.015 11 C -0.142 4.142 12 C -0.158 4.158 13 C -0.141 4.141 14 C -0.071 4.071 15 N -0.188 5.188 16 C 0.029 3.971 17 N -0.255 5.255 18 C -0.215 4.215 19 C -0.181 4.181 20 N -0.183 5.183 21 H 0.268 0.732 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.039 0.961 31 H 0.189 0.811 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.287 -11.542 -0.068 12.696 hybrid contribution 0.545 0.409 0.678 0.961 sum 5.832 -11.133 0.610 12.583 Atomic orbital electron populations 1.69988 1.06599 1.26502 1.53866 1.25438 0.95621 1.01586 0.96222 0.85594 0.78551 0.80591 0.77293 1.20571 1.20305 1.21239 1.21038 0.92168 0.90685 1.46169 0.94167 1.18879 0.87807 0.86327 0.92817 1.01492 1.21538 0.98422 0.97406 0.96847 1.21654 0.97826 0.95132 1.01200 1.21565 0.96801 0.98795 0.96892 1.22298 0.97020 0.89267 0.98493 1.58974 1.18408 1.05767 1.35674 1.21369 0.92982 0.89308 0.93399 1.71126 1.23587 1.25380 1.05357 1.22728 0.97144 0.99453 1.02200 1.23066 1.03349 0.99115 0.92552 1.43300 1.25487 1.23473 1.26052 0.73199 0.93397 0.91232 0.94267 0.93932 0.90729 0.88373 0.90680 0.88820 0.96130 0.81063 0.76257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 11.32 21.44 0.24 -55.94 16 2 C 0.01 0.45 5.30 84.65 0.45 0.90 16 3 Si 0.95 48.16 29.54 68.60 2.03 50.19 16 4 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.46 -27.36 6.89 25.60 0.18 -27.18 16 8 H 0.04 2.51 6.79 -2.91 -0.02 2.49 16 9 C 0.25 13.17 1.55 44.19 0.07 13.23 16 10 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 11 C -0.10 -4.98 5.14 30.64 0.16 -4.82 16 12 C -0.12 -4.41 6.00 30.67 0.18 -4.23 16 13 C -0.10 -3.03 6.09 30.64 0.19 -2.85 16 14 C 0.06 1.89 5.38 86.32 0.46 2.36 16 15 N -0.46 -20.40 4.57 -686.90 -3.14 -23.54 16 16 C 0.38 16.66 6.64 260.36 1.73 18.38 16 17 N -0.53 -26.11 8.51 -197.94 -1.69 -27.80 16 18 C -0.07 -2.59 11.84 83.42 0.99 -1.60 16 19 C -0.05 -1.38 12.04 82.89 1.00 -0.38 16 20 N -0.57 -17.82 6.00 -195.52 -1.17 -18.99 16 21 H 0.43 9.69 8.64 -92.71 -0.80 8.89 16 22 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.07 3.80 6.09 -2.39 -0.01 3.79 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.42 7.60 -2.39 -0.02 2.41 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.17 5.67 8.06 -2.91 -0.02 5.65 16 32 H 0.22 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -74.30 258.67 1.99 -72.31 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.31 Total: 9.94 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.40 Total: -6.18 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.75 Total: -126.26 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -74.30 1.99 -72.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.600 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds