Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48498 * 109.46768 * 270.00100 * 3 2 1 5 5 H 1.48492 * 109.47422 * 30.00122 * 3 2 1 6 6 H 1.48497 * 109.47059 * 150.00566 * 3 2 1 7 7 C 1.37880 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99488 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00185 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46551 * 60.01689 * 9 7 2 11 11 C 1.53037 * 109.46191 * 179.97438 * 9 7 2 12 12 C 1.53126 * 109.27880 * 60.83717 * 11 9 7 13 13 H 1.09006 * 109.51941 * 297.74603 * 12 11 9 14 14 C 1.50697 * 109.57228 * 177.59268 * 12 11 9 15 15 C 1.39869 * 126.04087 * 299.96723 * 14 12 11 16 16 N 1.30835 * 108.20288 * 179.82068 * 15 14 12 17 17 N 1.40085 * 108.20892 * 0.44457 * 16 15 14 18 18 H 0.96996 * 126.04199 * 179.74390 * 17 16 15 19 19 C 1.34954 * 107.92127 * 359.71621 * 17 16 15 20 20 C 1.53114 * 109.16239 * 57.65311 * 12 11 9 21 21 C 1.53037 * 109.31211 * 302.32855 * 20 12 11 22 22 N 1.46850 * 109.46313 * 300.04899 * 9 7 2 23 23 H 0.97000 * 120.00316 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.50150 * 300.89488 * 11 9 7 25 25 H 1.09006 * 109.50306 * 180.77299 * 11 9 7 26 26 H 1.07996 * 125.89647 * 0.02562 * 15 14 12 27 27 H 1.07998 * 126.12638 * 180.02562 * 19 17 16 28 28 H 1.09002 * 109.50377 * 62.28979 * 20 12 11 29 29 H 1.09003 * 109.50316 * 182.36975 * 20 12 11 30 30 H 1.08994 * 109.46612 * 179.21753 * 21 20 12 31 31 H 1.09007 * 109.46083 * 299.18512 * 21 20 12 32 32 H 1.00903 * 110.99884 * 65.82614 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6250 -2.5563 -0.8921 11 6 2.2457 -3.6622 -0.0027 12 6 3.1096 -3.5897 1.2595 13 1 3.6835 -2.6630 1.2554 14 6 4.0517 -4.7654 1.2946 15 6 3.6836 -6.1147 1.3126 16 7 4.7751 -6.8357 1.3382 17 7 5.8737 -5.9667 1.3475 18 1 6.8077 -6.2277 1.3692 19 6 5.4032 -4.7021 1.3204 20 6 2.2021 -3.6242 2.4923 21 6 1.2087 -2.4622 2.4220 22 7 0.4055 -2.5770 1.1964 23 1 -0.4850 0.8400 0.0004 24 1 2.8832 -3.5950 -0.8843 25 1 1.7015 -4.6065 -0.0174 26 1 2.6731 -6.4955 1.3034 27 1 5.9986 -3.8011 1.3190 28 1 1.6572 -4.5679 2.5168 29 1 2.8085 -3.5305 3.3932 30 1 0.5522 -2.4925 3.2916 31 1 1.7539 -1.5184 2.4114 32 1 -0.3207 -1.8769 1.1726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259846062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 61.138449 kcal Electronic energy + Delta-G solvation = -15257.873610 eV Core-core repulsion = 12833.182752 eV Total energy + Delta-G solvation = -2424.690858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90955 -37.53541 -33.11806 -31.58860 -30.87425 -29.64404 -28.19238 -25.09935 -22.62483 -21.76030 -21.40343 -19.63681 -18.59784 -17.23160 -15.87707 -15.11579 -14.53210 -14.28271 -14.16838 -13.47052 -13.13610 -12.79070 -12.41258 -12.07495 -11.88999 -11.42118 -11.03231 -10.90345 -10.74720 -10.56448 -10.18296 -9.82249 -9.51618 -9.35187 -9.24571 -9.06743 -8.46317 -7.98943 -6.89791 -5.97789 -4.13313 2.15834 3.14056 3.15340 3.25217 3.32955 3.34939 4.38273 5.09669 5.19676 5.21624 5.72374 5.80586 5.94066 5.97294 6.10710 6.32368 6.43268 6.54605 6.67119 6.77245 6.87179 7.00389 7.09164 7.17077 7.24769 7.36595 7.49818 7.76120 7.83520 7.92164 8.27644 8.75127 8.97853 9.19170 9.56593 10.98713 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040048 B = 0.008266 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.984913 B = 3386.486569 C = 3726.318308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.203 3.797 10 H 0.037 0.963 11 C -0.088 4.088 12 C -0.005 4.005 13 H 0.076 0.924 14 C -0.207 4.207 15 C 0.059 3.941 16 N -0.308 5.308 17 N -0.488 5.488 18 H 0.433 0.567 19 C 0.043 3.957 20 C -0.095 4.095 21 C 0.068 3.932 22 N -0.690 5.690 23 H 0.263 0.737 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.180 0.820 27 H 0.171 0.829 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.774 -6.612 3.606 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.095 3.905 10 H 0.055 0.945 11 C -0.126 4.126 12 C -0.025 4.025 13 H 0.094 0.906 14 C -0.218 4.218 15 C -0.128 4.128 16 N -0.131 5.131 17 N -0.196 5.196 18 H 0.276 0.724 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.062 4.062 22 N -0.323 5.323 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.197 0.803 27 H 0.189 0.811 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.062 -8.348 3.636 12.162 hybrid contribution 0.933 2.772 -0.066 2.926 sum 8.995 -5.576 3.570 11.169 Atomic orbital electron populations 1.69726 1.05805 1.26845 1.51236 1.25009 0.94835 0.99057 0.94826 0.86662 0.79914 0.83738 0.78096 1.20723 1.21316 1.20016 1.21855 0.93474 0.91734 1.50296 0.92751 1.19073 0.90437 0.90826 0.90169 0.94485 1.21535 0.97020 0.98785 0.95254 1.19509 0.93658 0.93144 0.96162 0.90550 1.20554 0.93226 0.95890 1.12162 1.23786 0.97693 0.92215 0.99104 1.77221 0.93229 1.17302 1.25358 1.46198 1.08487 1.04203 1.60750 0.72425 1.22403 0.95702 0.88916 1.03266 1.21492 0.96631 0.99162 0.96018 1.21569 0.94855 0.96645 0.93174 1.60956 1.15075 1.54710 1.01605 0.92706 0.93626 0.93923 0.80309 0.81136 0.92730 0.93803 0.94186 0.94601 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 11.56 55.43 0.64 -23.99 16 2 C 0.06 1.71 5.39 -17.82 -0.10 1.61 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -13.91 6.47 -34.44 -0.22 -14.13 16 8 H 0.05 1.41 6.76 -52.49 -0.35 1.06 16 9 C 0.20 4.96 3.04 -68.88 -0.21 4.75 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.09 -1.82 4.77 -26.65 -0.13 -1.94 16 12 C -0.01 -0.09 2.36 -91.65 -0.22 -0.31 16 13 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 14 C -0.21 -3.36 4.81 -105.05 -0.51 -3.87 16 15 C 0.06 0.93 11.36 -17.37 -0.20 0.73 16 16 N -0.31 -4.80 12.70 30.62 0.39 -4.41 16 17 N -0.49 -6.26 7.36 30.45 0.22 -6.04 16 18 H 0.43 3.92 8.96 -182.61 -1.64 2.28 16 19 C 0.04 0.59 11.88 -17.22 -0.20 0.39 16 20 C -0.09 -1.75 5.28 -26.65 -0.14 -1.89 16 21 C 0.07 1.45 6.31 -3.76 -0.02 1.42 16 22 N -0.69 -16.25 6.61 -107.89 -0.71 -16.96 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.85 7.97 -51.93 -0.41 0.43 16 26 H 0.18 2.56 8.06 -52.49 -0.42 2.14 16 27 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.05 0.98 7.96 -51.93 -0.41 0.57 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.84 6.99 -51.92 -0.36 0.48 16 32 H 0.35 9.06 6.95 -39.29 -0.27 8.79 16 LS Contribution 260.04 15.07 3.92 3.92 Total: -1.00 -28.68 260.04 -7.98 -36.66 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.47 Total: 8.32 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.94 Total: -13.24 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.54 Total: -51.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.68 -7.98 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259846062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.798 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds