Wall clock time and date at job start Mon Mar 30 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.46266 * 299.97492 * 9 7 2 11 11 C 1.53046 * 109.45926 * 180.02562 * 9 7 2 12 12 C 1.53118 * 109.27400 * 299.16132 * 11 9 7 13 13 H 1.09003 * 109.52415 * 62.25333 * 12 11 9 14 14 C 1.50704 * 109.51911 * 182.37993 * 12 11 9 15 15 C 1.39867 * 126.04005 * 59.69293 * 14 12 11 16 16 N 1.30846 * 108.20183 * 179.81834 * 15 14 12 17 17 N 1.40086 * 108.20220 * 0.43753 * 16 15 14 18 18 H 0.96996 * 126.03568 * 179.69853 * 17 16 15 19 19 C 1.34949 * 107.92530 * 359.72029 * 17 16 15 20 20 C 1.53119 * 109.16500 * 302.34462 * 12 11 9 21 21 C 1.53035 * 109.27490 * 57.65725 * 20 12 11 22 22 N 1.46845 * 109.46220 * 59.94772 * 9 7 2 23 23 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.50283 * 59.10101 * 11 9 7 25 25 H 1.08992 * 109.49744 * 179.22506 * 11 9 7 26 26 H 1.07992 * 125.90130 * 359.97438 * 15 14 12 27 27 H 1.08003 * 126.12348 * 180.02562 * 19 17 16 28 28 H 1.08995 * 109.50416 * 177.59501 * 20 12 11 29 29 H 1.08995 * 109.50531 * 297.72080 * 20 12 11 30 30 H 1.09004 * 109.46456 * 60.84058 * 21 20 12 31 31 H 1.09002 * 109.46556 * 180.81405 * 21 20 12 32 32 H 1.00900 * 110.99986 * 182.36488 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8750 -0.6809 -0.8891 11 6 4.0213 -2.6372 0.0010 12 6 3.5251 -3.3486 1.2628 13 1 2.4356 -3.3823 1.2575 14 6 4.0722 -4.7525 1.2974 15 6 5.4247 -5.1085 1.3094 16 7 5.5034 -6.4141 1.3444 17 7 4.2014 -6.9311 1.3457 18 1 3.9604 -7.8704 1.3639 19 6 3.3416 -5.8913 1.3165 20 6 4.0073 -2.5797 2.4960 21 6 3.4979 -1.1384 2.4237 22 7 4.0003 -0.5005 1.1996 23 1 -0.4850 0.8401 -0.0004 24 1 3.6454 -3.1559 -0.8809 25 1 5.1111 -2.6380 -0.0125 26 1 6.2599 -4.4240 1.2950 27 1 2.2636 -5.9565 1.3101 28 1 3.6215 -3.0573 3.3965 29 1 5.0970 -2.5796 2.5217 30 1 2.4079 -1.1386 2.4120 31 1 3.8516 -0.5841 3.2931 32 1 5.0081 -0.4532 1.2042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259846066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:33 Heat of formation + Delta-G solvation = 74.535329 kcal Electronic energy + Delta-G solvation = -15300.940095 eV Core-core repulsion = 12876.830169 eV Total energy + Delta-G solvation = -2424.109926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01190 -38.00358 -32.89620 -31.90795 -30.99647 -30.04915 -28.29148 -25.26581 -22.70183 -21.88129 -21.49761 -19.72485 -18.87776 -17.39171 -16.24934 -14.93568 -14.46835 -14.37859 -14.12486 -13.69396 -13.50568 -12.88174 -12.55464 -12.33975 -12.17407 -11.41248 -11.36451 -10.95094 -10.62951 -10.30463 -10.07473 -9.77670 -9.63660 -9.56346 -9.44632 -8.89726 -8.41632 -8.11553 -6.85570 -5.92504 -3.98241 2.08093 3.04250 3.06849 3.56703 3.66852 3.98925 4.78549 4.97311 5.14064 5.29051 5.55346 5.67222 5.71766 5.81828 5.84816 6.15105 6.17352 6.25416 6.34842 6.50565 6.59106 6.78138 6.89779 6.93762 7.00103 7.16400 7.35358 7.42408 7.75933 7.82850 8.14087 8.50818 8.76802 9.08620 9.74602 11.17469 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049307 B = 0.008178 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.738301 B = 3422.894274 C = 3635.639752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.081 3.919 3 Si 0.861 3.139 4 H -0.299 1.299 5 H -0.306 1.306 6 H -0.192 1.192 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.177 3.823 10 H 0.037 0.963 11 C -0.119 4.119 12 C -0.004 4.004 13 H 0.087 0.913 14 C -0.211 4.211 15 C 0.055 3.945 16 N -0.307 5.307 17 N -0.486 5.486 18 H 0.434 0.566 19 C 0.049 3.951 20 C -0.134 4.134 21 C 0.065 3.935 22 N -0.677 5.677 23 H 0.260 0.740 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.177 0.823 27 H 0.174 0.826 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -8.680 4.047 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.122 4.122 3 Si 0.689 3.311 4 H -0.226 1.226 5 H -0.234 1.234 6 H -0.113 1.113 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.069 3.931 10 H 0.054 0.946 11 C -0.158 4.158 12 C -0.024 4.024 13 H 0.105 0.895 14 C -0.222 4.222 15 C -0.131 4.131 16 N -0.130 5.130 17 N -0.194 5.194 18 H 0.277 0.723 19 C -0.097 4.097 20 C -0.174 4.174 21 C -0.065 4.065 22 N -0.305 5.305 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.194 0.806 27 H 0.191 0.809 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.261 -9.075 4.074 12.931 hybrid contribution -0.023 0.162 -0.090 0.187 sum 8.238 -8.913 3.984 12.774 Atomic orbital electron populations 1.69971 1.06952 1.27087 1.50354 1.24994 0.94435 1.00028 0.92765 0.87266 0.84744 0.81382 0.77710 1.22637 1.23397 1.11307 1.20819 0.88091 0.94104 1.52084 0.91269 1.19616 0.96687 0.87885 0.88903 0.94553 1.22065 0.97571 0.99408 0.96797 1.19473 1.00713 0.87083 0.95098 0.89510 1.20511 0.92449 0.96589 1.12694 1.23718 0.97622 0.92244 0.99524 1.77222 0.99273 1.11288 1.25256 1.46210 1.04243 1.08491 1.60491 0.72286 1.22457 0.97076 0.87603 1.02578 1.22183 0.99323 0.98606 0.97277 1.21840 1.02564 0.90193 0.91900 1.61650 1.11634 1.54069 1.03162 0.93071 0.92679 0.94643 0.80634 0.80871 0.93097 0.93566 0.89260 0.93396 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.86 21.42 26.94 -169.99 -4.58 16.84 16 4 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.19 -4.38 5.16 56.52 0.29 -4.09 16 7 C -0.51 -13.61 7.05 -34.44 -0.24 -13.85 16 8 H 0.07 1.99 7.01 -52.49 -0.37 1.63 16 9 C 0.18 3.88 2.45 -68.87 -0.17 3.71 16 10 H 0.04 0.83 7.57 -51.93 -0.39 0.44 16 11 C -0.12 -2.24 4.75 -26.65 -0.13 -2.37 16 12 C 0.00 -0.07 2.36 -91.65 -0.22 -0.29 16 13 H 0.09 1.73 6.70 -51.93 -0.35 1.39 16 14 C -0.21 -3.28 4.81 -105.05 -0.51 -3.79 16 15 C 0.06 0.83 11.36 -17.36 -0.20 0.63 16 16 N -0.31 -4.62 12.70 30.62 0.39 -4.24 16 17 N -0.49 -6.08 7.36 30.45 0.22 -5.86 16 18 H 0.43 3.83 8.96 -182.61 -1.64 2.20 16 19 C 0.05 0.66 11.88 -17.22 -0.20 0.46 16 20 C -0.13 -2.22 5.28 -26.65 -0.14 -2.36 16 21 C 0.06 1.23 6.30 -3.81 -0.02 1.20 16 22 N -0.68 -13.65 3.27 -107.95 -0.35 -14.00 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 26 H 0.18 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.17 1.93 8.06 -52.48 -0.42 1.50 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.71 7.97 -51.93 -0.41 0.29 16 30 H 0.09 1.99 6.99 -51.93 -0.36 1.63 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.31 5.42 8.86 -39.29 -0.35 5.08 16 LS Contribution 256.18 15.07 3.86 3.86 Total: -1.00 -31.28 256.18 -7.25 -38.53 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.64 Total: 6.09 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.92 Total: -14.46 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 1.03 Total: -50.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.58 Total: 16.84 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.28 -7.25 -38.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259846066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.063 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds