Wall clock time and date at job start Mon Mar 30 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47557 * 300.00412 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00417 * 3 2 1 7 7 C 1.37877 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00512 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.33072 * 57.74862 * 9 7 2 11 11 C 1.55380 * 110.44350 * 295.47098 * 9 7 2 12 12 C 1.55142 * 101.43737 * 204.06279 * 11 9 7 13 13 C 1.54312 * 103.17714 * 35.64527 * 12 11 9 14 14 N 1.47443 * 107.23612 * 337.62814 * 13 12 11 15 15 C 1.46900 * 111.00227 * 236.74273 * 14 13 12 16 16 C 1.50701 * 109.47223 * 69.87126 * 15 14 13 17 17 C 1.39869 * 125.90164 * 94.71397 * 16 15 14 18 18 C 1.35314 * 107.92244 * 179.86562 * 17 16 15 19 19 N 1.34948 * 107.74661 * 0.39799 * 18 17 16 20 20 H 0.96996 * 126.03887 * 179.74606 * 19 18 17 21 21 N 1.30840 * 125.89802 * 275.02690 * 16 15 14 22 22 H 0.96999 * 119.99757 * 359.97438 * 1 2 3 23 23 H 1.09003 * 111.17446 * 86.01109 * 11 9 7 24 24 H 1.08996 * 111.00619 * 322.04780 * 11 9 7 25 25 H 1.09002 * 110.70816 * 277.17375 * 12 11 9 26 26 H 1.09005 * 110.70106 * 154.11515 * 12 11 9 27 27 H 1.08997 * 109.89327 * 97.03090 * 13 12 11 28 28 H 1.09003 * 109.89220 * 218.21893 * 13 12 11 29 29 H 1.08999 * 109.47147 * 189.87070 * 15 14 13 30 30 H 1.08994 * 109.46907 * 309.87190 * 15 14 13 31 31 H 1.08002 * 126.03818 * 359.97438 * 17 16 15 32 32 H 1.08000 * 126.12632 * 180.14274 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5889 -2.5543 -0.8648 11 6 0.4379 -2.6564 1.3142 12 6 0.2917 -4.1984 1.4029 13 6 1.6333 -4.7120 0.8393 14 7 2.1939 -3.6380 -0.0011 15 6 2.4427 -4.1147 -1.3681 16 6 1.1275 -4.3526 -2.0644 17 6 0.4608 -3.4425 -2.8913 18 6 -0.6791 -4.0300 -3.3232 19 7 -0.7363 -5.2646 -2.7815 20 1 -1.4453 -5.9133 -2.9133 21 7 0.4092 -5.4440 -1.9952 22 1 -0.4850 0.8401 0.0004 23 1 -0.5371 -2.1758 1.2340 24 1 0.9944 -2.2672 2.1667 25 1 -0.5410 -4.5426 0.7896 26 1 0.1625 -4.5142 2.4382 27 1 2.3172 -4.9377 1.6574 28 1 1.4651 -5.6046 0.2368 29 1 3.0135 -3.3651 -1.9161 30 1 3.0077 -5.0460 -1.3309 31 1 0.7974 -2.4474 -3.1422 32 1 -1.4137 -3.5882 -3.9801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:11 Heat of formation + Delta-G solvation = 82.453968 kcal Electronic energy + Delta-G solvation = -15559.430226 eV Core-core repulsion = 13135.663678 eV Total energy + Delta-G solvation = -2423.766548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74579 -37.71837 -32.78634 -32.11723 -29.73326 -29.48859 -28.03283 -25.20796 -23.98899 -21.14926 -20.07513 -19.73576 -18.56621 -17.63420 -16.22377 -15.27052 -14.43122 -14.18528 -13.84169 -13.50775 -12.94390 -12.70976 -12.54935 -12.19680 -11.60042 -11.48069 -10.95130 -10.65776 -10.52577 -10.39159 -10.17557 -9.87351 -9.68519 -9.53149 -9.07659 -8.77688 -8.34307 -8.07275 -7.19119 -5.91940 -3.91413 2.35564 3.31236 3.35590 3.36125 3.43712 3.49307 4.50061 5.15572 5.28070 5.37530 5.39732 5.73069 5.80230 5.94272 6.09930 6.28582 6.37118 6.48360 6.53992 6.59596 6.71486 6.74401 7.16394 7.20785 7.23270 7.53996 7.67421 7.70570 7.95927 8.14737 8.24316 8.35129 8.65089 9.15040 9.71273 11.17320 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.010692 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.380682 B = 2618.220131 C = 2977.468340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.196 3.804 10 H 0.041 0.959 11 C -0.104 4.104 12 C -0.146 4.146 13 C 0.042 3.958 14 N -0.513 5.513 15 C 0.132 3.868 16 C 0.063 3.937 17 C -0.238 4.238 18 C 0.041 3.959 19 N -0.490 5.490 20 H 0.430 0.570 21 N -0.299 5.299 22 H 0.257 0.743 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -7.735 -4.765 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.091 3.909 10 H 0.058 0.942 11 C -0.143 4.143 12 C -0.184 4.184 13 C -0.087 4.087 14 N -0.236 5.236 15 C 0.001 3.999 16 C -0.106 4.106 17 C -0.267 4.267 18 C -0.105 4.105 19 N -0.198 5.198 20 H 0.273 0.727 21 N -0.123 5.123 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.197 -8.580 -4.074 9.573 hybrid contribution -0.992 1.277 -0.738 1.778 sum -2.188 -7.303 -4.812 9.015 Atomic orbital electron populations 1.69989 1.05818 1.26113 1.51599 1.24921 0.94804 0.98865 0.95690 0.86541 0.80278 0.83891 0.77301 1.19700 1.21301 1.21326 1.21122 0.93420 0.89356 1.48959 0.91915 1.20501 0.88951 0.87349 0.94111 0.94167 1.22700 1.01044 0.90596 0.99999 1.22803 0.96989 0.99613 0.99024 1.22746 0.94622 0.94322 0.96984 1.63980 1.46832 1.06436 1.06375 1.20937 0.89215 1.00043 0.89708 1.23441 0.99223 0.91119 0.96819 1.21558 0.97384 1.02229 1.05575 1.22440 1.00118 0.87135 1.00848 1.46268 1.20204 1.13729 1.39649 0.72728 1.77203 0.95998 1.23467 1.15681 0.93356 0.91354 0.92815 0.93366 0.93098 0.92217 0.93138 0.88967 0.91182 0.83330 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 12.28 55.43 0.68 -24.85 16 2 C 0.06 1.60 5.35 -17.82 -0.10 1.50 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.49 -13.47 8.84 -34.44 -0.30 -13.77 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.20 4.95 2.07 -67.08 -0.14 4.81 16 10 H 0.04 1.08 4.73 -51.92 -0.25 0.84 16 11 C -0.10 -2.57 5.90 -24.33 -0.14 -2.71 16 12 C -0.15 -3.04 6.93 -24.91 -0.17 -3.22 16 13 C 0.04 0.84 6.46 -2.84 -0.02 0.82 16 14 N -0.51 -11.41 5.05 -225.88 -1.14 -12.55 16 15 C 0.13 2.59 5.84 -4.98 -0.03 2.56 16 16 C 0.06 1.23 5.00 -82.40 -0.41 0.82 16 17 C -0.24 -4.47 8.91 -40.01 -0.36 -4.82 16 18 C 0.04 0.62 11.99 -17.22 -0.21 0.42 16 19 N -0.49 -7.41 7.36 30.44 0.22 -7.19 16 20 H 0.43 4.81 8.96 -182.61 -1.64 3.17 16 21 N -0.30 -5.54 11.80 33.67 0.40 -5.14 16 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.07 1.80 7.59 -51.93 -0.39 1.41 16 24 H 0.05 1.36 8.06 -51.93 -0.42 0.94 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.98 6.50 -51.93 -0.34 0.65 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 31 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 32 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 263.30 15.07 3.97 3.97 Total: -1.00 -30.66 263.30 -8.30 -38.96 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.53 Total: 4.01 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.88 Total: -13.59 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.16 Total: -49.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.66 -8.30 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.418 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds