Wall clock time and date at job start Mon Mar 30 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47557 * 300.00412 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00417 * 3 2 1 7 7 C 1.37877 * 119.99560 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00512 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.33072 * 57.74862 * 9 7 2 11 11 C 1.55380 * 110.44350 * 295.47098 * 9 7 2 12 12 C 1.55142 * 101.43737 * 204.06279 * 11 9 7 13 13 C 1.54312 * 103.17714 * 35.64527 * 12 11 9 14 14 N 1.47443 * 107.23612 * 337.62814 * 13 12 11 15 15 C 1.46900 * 111.00227 * 236.74273 * 14 13 12 16 16 C 1.50701 * 109.47223 * 69.87126 * 15 14 13 17 17 C 1.39869 * 125.90164 * 94.71397 * 16 15 14 18 18 C 1.35314 * 107.92244 * 179.86562 * 17 16 15 19 19 N 1.34948 * 107.74661 * 0.39799 * 18 17 16 20 20 H 0.96996 * 126.03887 * 179.74606 * 19 18 17 21 21 N 1.30840 * 125.89802 * 275.02690 * 16 15 14 22 22 H 0.96999 * 119.99757 * 359.97438 * 1 2 3 23 23 H 1.09003 * 111.17446 * 86.01109 * 11 9 7 24 24 H 1.08996 * 111.00619 * 322.04780 * 11 9 7 25 25 H 1.09002 * 110.70816 * 277.17375 * 12 11 9 26 26 H 1.09005 * 110.70106 * 154.11515 * 12 11 9 27 27 H 1.08997 * 109.89327 * 97.03090 * 13 12 11 28 28 H 1.09003 * 109.89220 * 218.21893 * 13 12 11 29 29 H 1.08999 * 109.47147 * 189.87070 * 15 14 13 30 30 H 1.08994 * 109.46907 * 309.87190 * 15 14 13 31 31 H 1.08002 * 126.03818 * 359.97438 * 17 16 15 32 32 H 1.08000 * 126.12632 * 180.14274 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5889 -2.5543 -0.8648 11 6 0.4379 -2.6564 1.3142 12 6 0.2917 -4.1984 1.4029 13 6 1.6333 -4.7120 0.8393 14 7 2.1939 -3.6380 -0.0011 15 6 2.4427 -4.1147 -1.3681 16 6 1.1275 -4.3526 -2.0644 17 6 0.4608 -3.4425 -2.8913 18 6 -0.6791 -4.0300 -3.3232 19 7 -0.7363 -5.2646 -2.7815 20 1 -1.4453 -5.9133 -2.9133 21 7 0.4092 -5.4440 -1.9952 22 1 -0.4850 0.8401 0.0004 23 1 -0.5371 -2.1758 1.2340 24 1 0.9944 -2.2672 2.1667 25 1 -0.5410 -4.5426 0.7896 26 1 0.1625 -4.5142 2.4382 27 1 2.3172 -4.9377 1.6574 28 1 1.4651 -5.6046 0.2368 29 1 3.0135 -3.3651 -1.9161 30 1 3.0077 -5.0460 -1.3309 31 1 0.7974 -2.4474 -3.1422 32 1 -1.4137 -3.5882 -3.9801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:11 Heat of formation + Delta-G solvation = 60.935569 kcal Electronic energy + Delta-G solvation = -15560.363333 eV Core-core repulsion = 13135.663678 eV Total energy + Delta-G solvation = -2424.699655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11901 -39.43798 -34.73448 -33.79477 -31.27473 -30.88607 -29.92471 -26.87241 -25.93656 -22.57264 -21.71122 -21.46155 -20.18409 -18.94943 -18.23032 -16.99957 -16.38546 -15.85330 -15.39370 -14.92579 -14.39427 -14.31468 -14.20052 -14.00987 -13.33453 -13.19882 -12.87133 -12.54202 -12.34292 -12.08443 -11.87851 -11.58470 -11.50885 -11.34072 -10.93102 -10.42232 -10.27002 -9.47763 -8.94683 -8.02294 -6.08441 1.03510 1.44416 1.47044 1.58806 1.90983 2.14215 2.49744 3.27658 3.55528 3.88562 4.03201 4.09838 4.23058 4.40383 4.49442 4.77059 4.84195 4.95689 4.97354 5.00298 5.04703 5.17844 5.27131 5.42982 5.55962 5.73206 5.74696 5.85888 6.29023 6.54606 6.57511 6.68137 6.83602 7.03024 7.57857 9.05726 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.010692 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.380682 B = 2618.220131 C = 2977.468340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.051 0.949 9 C 0.200 3.800 10 H 0.025 0.975 11 C -0.103 4.103 12 C -0.132 4.132 13 C 0.045 3.955 14 N -0.526 5.526 15 C 0.131 3.869 16 C 0.049 3.951 17 C -0.280 4.280 18 C 0.066 3.934 19 N -0.473 5.473 20 H 0.450 0.550 21 N -0.316 5.316 22 H 0.258 0.742 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -8.560 -5.149 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.093 3.907 10 H 0.043 0.957 11 C -0.142 4.142 12 C -0.171 4.171 13 C -0.083 4.083 14 N -0.249 5.249 15 C 0.001 3.999 16 C -0.119 4.119 17 C -0.309 4.309 18 C -0.081 4.081 19 N -0.183 5.183 20 H 0.296 0.704 21 N -0.142 5.142 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.539 -9.442 -4.458 10.555 hybrid contribution -0.935 1.489 -0.672 1.882 sum -2.474 -7.954 -5.130 9.783 Atomic orbital electron populations 1.70097 1.06979 1.26801 1.52266 1.25595 0.95562 1.01822 0.95380 0.85600 0.79155 0.80094 0.77326 1.19359 1.20650 1.21157 1.21366 0.93055 0.90983 1.48986 0.93057 1.20289 0.89055 0.87724 0.93602 0.95709 1.22524 0.99232 0.93271 0.99189 1.22696 0.97303 0.96478 1.00596 1.22781 0.94365 0.93930 0.97188 1.63873 1.46150 1.06611 1.08246 1.20897 0.89933 1.00597 0.88501 1.23294 0.99344 0.91759 0.97490 1.21605 0.99475 1.02136 1.07734 1.22963 0.99275 0.86447 0.99434 1.46282 1.19701 1.14128 1.38213 0.70388 1.77105 0.97071 1.23256 1.16735 0.93340 0.93940 0.94365 0.93795 0.90588 0.90748 0.92125 0.89765 0.89190 0.85144 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 12.28 21.45 0.26 -52.96 16 2 C 0.01 0.81 5.35 84.65 0.45 1.27 16 3 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.51 -28.24 8.84 25.60 0.23 -28.02 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.20 10.19 2.07 44.81 0.09 10.28 16 10 H 0.03 1.37 4.73 -2.38 -0.01 1.36 16 11 C -0.10 -5.11 5.90 32.15 0.19 -4.92 16 12 C -0.13 -5.36 6.93 31.77 0.22 -5.14 16 13 C 0.05 1.76 6.46 86.64 0.56 2.32 16 14 N -0.53 -23.22 5.05 -868.56 -4.39 -27.60 16 15 C 0.13 5.13 5.84 85.56 0.50 5.63 16 16 C 0.05 1.88 5.00 43.10 0.22 2.10 16 17 C -0.28 -10.43 8.91 21.99 0.20 -10.23 16 18 C 0.07 1.89 11.99 83.54 1.00 2.89 16 19 N -0.47 -13.09 7.36 -57.59 -0.42 -13.51 16 20 H 0.45 8.59 8.96 -213.33 -1.91 6.68 16 21 N -0.32 -11.18 11.80 -47.38 -0.56 -11.74 16 22 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 23 H 0.04 2.28 7.59 -2.39 -0.02 2.26 16 24 H 0.04 1.96 8.06 -2.39 -0.02 1.94 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.06 2.24 6.50 -2.39 -0.02 2.22 16 29 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 31 H 0.13 5.24 8.06 -2.91 -0.02 5.22 16 32 H 0.21 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -65.65 263.30 -0.22 -65.86 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.79 Total: 17.50 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.65 Total: -23.82 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.10 Total: -105.81 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.65 -0.22 -65.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.799 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds