Wall clock time and date at job start Mon Mar 30 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46861 * 2 1 4 4 C 1.50700 * 109.47343 * 240.00158 * 2 1 3 5 5 H 1.07998 * 119.99887 * 245.45764 * 4 2 1 6 6 C 1.37877 * 120.00106 * 65.46206 * 4 2 1 7 7 N 1.31518 * 119.99912 * 9.56558 * 6 4 2 8 8 Si 1.86803 * 120.00184 * 189.57086 * 6 4 2 9 9 H 1.48499 * 109.47175 * 84.98779 * 8 6 4 10 10 H 1.48497 * 109.47228 * 204.99139 * 8 6 4 11 11 H 1.48498 * 109.46995 * 324.99236 * 8 6 4 12 12 C 1.50695 * 109.47345 * 119.99688 * 2 1 3 13 13 N 1.30515 * 125.58988 * 240.00439 * 12 2 1 14 14 C 1.33874 * 108.56207 * 179.97438 * 13 12 2 15 15 C 1.34682 * 107.71979 * 0.03715 * 14 13 12 16 16 O 1.34047 * 107.31164 * 0.18216 * 15 14 13 17 17 C 1.50708 * 124.35625 * 179.97438 * 15 14 13 18 18 C 1.53370 * 108.41447 * 343.49866 * 17 15 14 19 19 C 1.53126 * 109.46188 * 49.68180 * 18 17 15 20 20 C 1.50800 * 128.12072 * 180.02562 * 14 13 12 21 21 H 1.09000 * 109.46895 * 63.51114 * 1 2 3 22 22 H 1.09003 * 109.46806 * 183.50278 * 1 2 3 23 23 H 1.08997 * 109.47180 * 303.50767 * 1 2 3 24 24 H 0.97003 * 119.99952 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.67511 * 103.21825 * 17 15 14 26 26 H 1.08997 * 109.67440 * 223.75425 * 17 15 14 27 27 H 1.09004 * 109.46919 * 289.68631 * 18 17 15 28 28 H 1.09004 * 109.47848 * 169.68405 * 18 17 15 29 29 H 1.09000 * 109.47034 * 170.09705 * 19 18 17 30 30 H 1.09003 * 109.46618 * 50.11375 * 19 18 17 31 31 H 1.09003 * 109.67450 * 283.05672 * 20 14 13 32 32 H 1.08999 * 109.67923 * 43.56115 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1338 6 6 1.7947 -0.1773 -2.4796 7 7 1.2995 1.0358 -2.5935 8 14 2.1758 -1.1781 -4.0102 9 1 1.0237 -2.0609 -4.3240 10 1 2.4226 -0.2615 -5.1522 11 1 3.3841 -2.0075 -3.7711 12 6 2.0323 -0.7103 1.2304 13 7 2.7858 -0.1838 2.1570 14 6 3.0273 -1.1137 3.0893 15 6 2.3984 -2.2439 2.7136 16 8 1.7821 -1.9897 1.5507 17 6 2.4229 -3.5314 3.4966 18 6 3.5731 -3.4611 4.5086 19 6 3.4913 -2.1428 5.2832 20 6 3.8454 -0.9787 4.3489 21 1 -0.3633 0.4584 -0.9198 22 1 -0.3633 -1.0258 0.0628 23 1 -0.3633 0.5673 0.8569 24 1 1.1319 1.4107 -3.4723 25 1 1.4775 -3.6582 4.0240 26 1 2.5810 -4.3701 2.8187 27 1 4.5253 -3.5138 3.9807 28 1 3.4967 -4.2967 5.2044 29 1 4.1941 -2.1665 6.1161 30 1 2.4794 -2.0083 5.6657 31 1 4.9067 -1.0134 4.1027 32 1 3.6129 -0.0326 4.8379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259922655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:19 Heat of formation + Delta-G solvation = -27.284163 kcal Electronic energy + Delta-G solvation = -14986.995864 eV Core-core repulsion = 12526.177963 eV Total energy + Delta-G solvation = -2460.817901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.28561 -38.17710 -36.48228 -35.42484 -33.05224 -31.34741 -29.62117 -27.35900 -25.14551 -23.85517 -23.21149 -21.91128 -20.27674 -18.60777 -17.62732 -17.46823 -16.73270 -16.01425 -15.45281 -14.87860 -14.82952 -14.38196 -14.23391 -13.84914 -13.71743 -13.21323 -13.01945 -12.82533 -12.52381 -12.40847 -12.13486 -11.94367 -11.87165 -11.82920 -11.53609 -11.24755 -11.14898 -10.60585 -9.25641 -8.26647 -6.39636 0.61590 1.39807 1.41092 1.51026 1.79621 1.91992 2.37808 3.03776 3.23610 3.79698 3.91621 3.99005 4.13977 4.23405 4.52188 4.56396 4.64564 4.69613 4.79988 4.84930 4.96807 5.00554 5.03300 5.17086 5.25659 5.32548 5.38842 5.41970 5.54135 5.60558 5.71715 6.03096 6.62066 6.99990 7.27543 8.81980 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046105 B = 0.007189 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.169594 B = 3893.705313 C = 4105.604631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.128 3.872 3 H 0.044 0.956 4 C -0.544 4.544 5 H 0.046 0.954 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.217 3.783 13 N -0.531 5.531 14 C -0.041 4.041 15 C -0.091 4.091 16 O -0.207 6.207 17 C -0.027 4.027 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.035 4.035 21 H 0.064 0.936 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.271 0.729 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -9.140 13.561 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H 0.062 0.938 4 C -0.583 4.583 5 H 0.065 0.935 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.260 5.260 14 C -0.161 4.161 15 C -0.144 4.144 16 O -0.094 6.094 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.072 4.072 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.709 -8.400 13.405 16.050 hybrid contribution -0.152 -0.504 -1.300 1.403 sum 2.557 -8.904 12.105 15.243 Atomic orbital electron populations 1.21586 0.95405 0.99872 1.00677 1.17400 0.93991 0.93879 0.83881 0.93766 1.21064 1.37879 1.08313 0.90996 0.93547 1.25686 0.94394 0.95571 1.01765 1.70043 1.44378 1.14852 1.25355 0.85483 0.78858 0.78627 0.78224 1.19113 1.19973 1.19894 1.27332 0.95105 0.78845 0.97578 1.70204 1.17458 1.34095 1.04284 1.22281 1.04301 0.89782 0.99763 1.24127 1.01196 1.01565 0.87534 1.84276 1.59196 1.31088 1.34855 1.20395 1.02267 0.88131 0.95639 1.21659 0.96701 0.99250 0.97141 1.21662 1.03306 0.92415 0.97590 1.20185 0.97470 1.01073 0.88520 0.91736 0.93992 0.94546 0.92008 0.88075 0.89314 0.91709 0.86716 0.87602 0.91268 0.89977 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 9.05 71.98 0.65 -5.18 16 2 C 0.13 7.07 2.63 -12.29 -0.03 7.04 16 3 H 0.04 2.68 8.09 -2.39 -0.02 2.66 16 4 C -0.54 -31.65 8.46 25.60 0.22 -31.43 16 5 H 0.05 2.74 7.76 -2.91 -0.02 2.72 16 6 C 0.03 1.50 5.17 84.65 0.44 1.94 16 7 N -0.91 -52.35 12.16 21.45 0.26 -52.09 16 8 Si 0.96 43.81 29.55 68.60 2.03 45.84 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.22 11.19 6.79 88.30 0.60 11.79 16 13 N -0.53 -26.23 11.29 -291.42 -3.29 -29.52 16 14 C -0.04 -1.62 6.98 41.46 0.29 -1.33 16 15 C -0.09 -3.46 7.24 24.87 0.18 -3.28 16 16 O -0.21 -9.84 10.77 0.62 0.01 -9.83 16 17 C -0.03 -0.65 6.30 29.97 0.19 -0.47 16 18 C -0.11 -1.90 5.91 30.76 0.18 -1.72 16 19 C -0.11 -2.01 5.91 30.78 0.18 -1.83 16 20 C -0.03 -0.95 6.30 30.02 0.19 -0.76 16 21 H 0.06 3.37 6.83 -2.39 -0.02 3.35 16 22 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.20 8.12 -2.38 -0.02 1.18 16 28 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.77 268.20 3.19 -65.58 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.10 Total: 5.24 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.08 Total: -25.22 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.03 Total: -81.61 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.01 Total: -9.83 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.77 3.19 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.297 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds