Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35998 * 117.00273 * 2 1 4 4 C 1.38725 * 119.97588 * 359.97438 * 3 2 1 5 5 C 1.38092 * 120.01720 * 179.97438 * 4 3 2 6 6 C 1.38884 * 119.98016 * 0.27969 * 5 4 3 7 7 N 1.39938 * 120.02068 * 179.69647 * 6 5 4 8 8 C 1.38843 * 119.95889 * 359.46427 * 6 5 4 9 9 C 1.50702 * 120.01029 * 180.25675 * 8 6 5 10 10 H 1.09010 * 109.46991 * 355.71940 * 9 8 6 11 11 C 1.52998 * 109.47187 * 235.72323 * 9 8 6 12 12 C 1.50691 * 109.47294 * 115.72023 * 9 8 6 13 13 H 1.08001 * 119.99965 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00113 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00100 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00084 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47107 * 60.00210 * 16 14 12 18 18 H 1.48503 * 109.46996 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46799 * 299.99846 * 16 14 12 20 20 C 1.38131 * 119.98124 * 0.53202 * 8 6 5 21 21 H 1.09005 * 109.46477 * 60.00456 * 1 2 3 22 22 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47487 * 300.00288 * 1 2 3 24 24 H 1.07999 * 119.99305 * 359.97438 * 4 3 2 25 25 H 1.07997 * 120.01178 * 179.97438 * 5 4 3 26 26 H 0.97000 * 119.99542 * 6.63050 * 7 6 5 27 27 H 0.97001 * 120.00108 * 186.62288 * 7 6 5 28 28 H 1.08995 * 109.47200 * 300.00021 * 11 9 8 29 29 H 1.09006 * 109.47057 * 59.99989 * 11 9 8 30 30 H 1.09004 * 109.47243 * 179.97438 * 11 9 8 31 31 H 0.96994 * 120.00055 * 179.97438 * 15 14 12 32 32 H 1.08002 * 119.98821 * 179.69807 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2905 2.3749 -0.0005 5 6 1.9166 3.6057 0.0000 6 6 3.3035 3.6789 -0.0048 7 7 3.9388 4.9257 -0.0107 8 6 4.0593 2.5142 0.0011 9 6 5.5643 2.5922 0.0018 10 1 5.8741 3.6342 -0.0796 11 6 6.1165 1.8018 -1.1862 12 6 6.0970 2.0085 1.2848 13 1 5.4141 1.6194 2.0256 14 6 7.4563 1.9701 1.5126 15 7 8.2880 2.4434 0.6104 16 14 8.1168 1.2457 3.1029 17 1 7.6943 -0.1736 3.2133 18 1 9.5998 1.3228 3.1035 19 1 7.5812 2.0129 4.2561 20 6 3.4313 1.2838 0.0007 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2120 2.3178 -0.0014 25 1 1.3280 4.5112 -0.0008 26 1 3.4158 5.7369 0.0856 27 1 4.9022 4.9787 -0.1109 28 1 5.8067 0.7600 -1.1049 29 1 5.7311 2.2241 -2.1143 30 1 7.2050 1.8586 -1.1860 31 1 9.2442 2.4167 0.7709 32 1 4.0191 0.3778 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -18.598388 kcal Electronic energy + Delta-G solvation = -14957.073871 eV Core-core repulsion = 12496.632613 eV Total energy + Delta-G solvation = -2460.441258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.52668 -37.53690 -34.14033 -33.12316 -31.33738 -28.95126 -27.33307 -26.24243 -25.08846 -22.80237 -21.15971 -19.50300 -17.07888 -16.83023 -16.12458 -15.77589 -15.22765 -14.68154 -14.60438 -13.36929 -13.12024 -12.78840 -12.56884 -12.25688 -11.96136 -11.60446 -11.35957 -11.12134 -10.87307 -10.76758 -10.56957 -10.24322 -9.98619 -9.34668 -9.23965 -8.99172 -8.34192 -7.88908 -6.45809 -5.98018 -4.04537 2.13595 2.37884 3.34272 3.38009 3.42342 3.85737 4.43278 4.62738 4.67285 5.28624 5.32272 5.39234 5.47933 5.54576 5.66612 6.01767 6.20158 6.44918 6.66169 6.74151 6.91685 6.97082 7.05376 7.24001 7.28853 7.51422 7.74656 7.91185 8.02399 8.11824 8.30489 8.42518 8.54592 8.97949 9.59819 11.06609 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.008750 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.516908 B = 3199.262900 C = 3656.907643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.060 3.940 4 C -0.185 4.185 5 C -0.173 4.173 6 C 0.176 3.824 7 N -0.882 5.882 8 C -0.067 4.067 9 C 0.082 3.918 10 H 0.033 0.967 11 C -0.134 4.134 12 C -0.503 4.503 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.097 4.097 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.385 0.615 27 H 0.402 0.598 28 H 0.030 0.970 29 H 0.008 0.992 30 H 0.084 0.916 31 H 0.261 0.739 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 0.892 -1.996 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.014 3.986 4 C -0.204 4.204 5 C -0.196 4.196 6 C 0.073 3.927 7 N -0.425 5.425 8 C -0.071 4.071 9 C 0.063 3.937 10 H 0.050 0.950 11 C -0.192 4.192 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.116 4.116 21 H 0.065 0.935 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.212 0.788 27 H 0.235 0.765 28 H 0.049 0.951 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.197 0.672 -2.030 11.400 hybrid contribution 0.202 0.136 0.937 0.968 sum -10.995 0.808 -1.093 11.079 Atomic orbital electron populations 1.22847 0.80091 1.02697 1.00593 1.86041 1.19917 1.27727 1.90223 1.18815 0.92316 0.83445 1.03980 1.20655 0.98515 0.92034 1.09203 1.20160 0.92409 0.96834 1.10212 1.17639 0.90955 0.86542 0.97518 1.42579 1.10486 1.04051 1.85413 1.20013 0.98236 0.89836 0.99014 1.17690 0.84078 0.96748 0.95161 0.94955 1.21819 1.04085 0.98182 0.95081 1.21105 0.91454 1.39669 1.01905 0.92489 1.24951 0.96968 0.95411 0.96627 1.69869 1.02744 1.46510 1.33999 0.86648 0.77551 0.79857 0.83924 1.20187 1.21348 1.20358 1.20121 0.90129 0.98564 1.02771 0.93481 0.89258 0.93437 0.86842 0.87195 0.78844 0.76546 0.95058 0.97328 0.89699 0.92953 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.74 10.50 -19.73 -0.21 -5.95 16 3 C 0.06 1.15 6.69 -39.24 -0.26 0.89 16 4 C -0.18 -3.18 9.03 -39.46 -0.36 -3.54 16 5 C -0.17 -3.02 9.90 -39.40 -0.39 -3.41 16 6 C 0.18 3.48 6.74 -83.69 -0.56 2.91 16 7 N -0.88 -15.13 9.01 32.45 0.29 -14.83 16 8 C -0.07 -1.50 4.74 -104.44 -0.50 -1.99 16 9 C 0.08 2.03 2.43 -92.93 -0.23 1.80 16 10 H 0.03 0.83 5.67 -51.92 -0.29 0.53 16 11 C -0.13 -3.26 8.73 37.16 0.32 -2.93 16 12 C -0.50 -13.77 8.30 -34.44 -0.29 -14.06 16 13 H 0.06 1.59 7.71 -52.49 -0.40 1.19 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.10 -2.10 8.81 -39.46 -0.35 -2.45 16 21 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 22 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.11 1.60 6.29 -52.49 -0.33 1.27 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.39 5.28 8.85 -40.82 -0.36 4.91 16 27 H 0.40 7.31 6.48 -40.82 -0.26 7.04 16 28 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.13 2.87 7.31 -52.49 -0.38 2.48 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -29.48 265.65 -5.93 -35.41 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.92 Total: 9.16 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -1.71 Total: -19.78 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.92 Total: -39.24 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.21 Total: -5.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.48 -5.93 -35.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.812 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds