Wall clock time and date at job start Mon Mar 30 2020 02:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35999 * 116.99761 * 2 1 4 4 C 1.38721 * 119.98617 * 0.02562 * 3 2 1 5 5 C 1.38081 * 120.01885 * 180.02562 * 4 3 2 6 6 C 1.38876 * 119.98557 * 359.97438 * 5 4 3 7 7 N 1.39940 * 120.02464 * 180.02562 * 6 5 4 8 8 C 1.38846 * 119.96017 * 0.28430 * 6 5 4 9 9 C 1.50696 * 120.01036 * 179.72470 * 8 6 5 10 10 H 1.09001 * 109.47342 * 3.27115 * 9 8 6 11 11 C 1.52997 * 109.47332 * 123.27559 * 9 8 6 12 12 C 1.50703 * 109.46942 * 243.27320 * 9 8 6 13 13 H 1.08002 * 120.00093 * 0.02562 * 12 9 8 14 14 C 1.37880 * 120.00184 * 179.97438 * 12 9 8 15 15 N 1.31511 * 119.99907 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 120.00033 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47368 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47208 * 119.99974 * 16 14 12 19 19 H 1.48500 * 109.46968 * 239.99862 * 16 14 12 20 20 C 1.38132 * 119.97536 * 359.42096 * 8 6 5 21 21 H 1.08999 * 109.47451 * 59.99262 * 1 2 3 22 22 H 1.09001 * 109.47662 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46761 * 299.99803 * 1 2 3 24 24 H 1.08004 * 119.98710 * 359.97438 * 4 3 2 25 25 H 1.08008 * 120.00530 * 179.97438 * 5 4 3 26 26 H 0.97003 * 119.99576 * 352.97506 * 7 6 5 27 27 H 0.97001 * 120.00447 * 172.69359 * 7 6 5 28 28 H 1.09005 * 109.47157 * 179.97438 * 11 9 8 29 29 H 1.09000 * 109.47223 * 299.99502 * 11 9 8 30 30 H 1.08993 * 109.47435 * 59.99821 * 11 9 8 31 31 H 0.96997 * 120.00204 * 180.02562 * 15 14 12 32 32 H 1.08001 * 119.98641 * 180.28111 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3750 0.0005 5 6 1.9167 3.6057 0.0000 6 6 3.3035 3.6789 -0.0005 7 7 3.9389 4.9257 -0.0005 8 6 4.0593 2.5142 -0.0065 9 6 5.5642 2.5923 -0.0134 10 1 5.8742 3.6356 0.0460 11 6 6.1202 1.8258 1.1884 12 6 6.0930 1.9828 -1.2862 13 1 5.4078 1.5797 -2.0172 14 6 7.4516 1.9408 -1.5180 15 7 8.2859 2.4322 -0.6280 16 14 8.1069 1.1861 -3.0959 17 1 6.9713 0.7092 -3.9255 18 1 8.8762 2.2075 -3.8510 19 1 8.9944 0.0420 -2.7661 20 6 3.4313 1.2839 0.0002 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2120 2.3179 0.0005 25 1 1.3279 4.5112 0.0000 26 1 3.4161 5.7364 -0.1029 27 1 4.9015 4.9795 0.1059 28 1 7.2088 1.8820 1.1832 29 1 5.7378 2.2666 2.1090 30 1 5.8103 0.7826 1.1290 31 1 9.2416 2.4030 -0.7912 32 1 4.0191 0.3778 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939172.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:46 Heat of formation + Delta-G solvation = -37.642712 kcal Electronic energy + Delta-G solvation = -14958.263108 eV Core-core repulsion = 12496.996026 eV Total energy + Delta-G solvation = -2461.267082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94575 -38.94377 -36.01824 -34.51971 -33.22518 -30.46763 -28.79039 -27.43500 -27.18490 -24.45860 -22.69127 -21.13781 -18.57582 -18.47696 -17.66890 -17.43133 -16.56473 -16.40266 -15.94725 -14.97028 -14.68420 -14.52889 -14.10864 -13.70750 -13.40924 -13.29054 -13.02604 -12.82762 -12.67273 -12.31481 -12.24135 -12.09480 -11.79906 -11.10872 -10.97475 -10.56978 -10.44031 -9.47386 -8.11444 -7.84733 -6.20258 0.64063 0.90036 1.38891 1.41799 1.53114 2.44001 2.65639 3.11191 3.18026 3.30863 4.09524 4.16222 4.43302 4.51162 4.54532 4.72165 4.79049 4.82844 4.90890 5.06731 5.26461 5.33810 5.35908 5.52124 5.62072 5.64387 5.91929 6.06925 6.11212 6.41080 6.66878 6.86209 6.88126 7.24820 7.46733 8.95806 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.008777 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.613829 B = 3189.465064 C = 3658.326483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.054 3.946 4 C -0.172 4.172 5 C -0.163 4.163 6 C 0.164 3.836 7 N -0.875 5.875 8 C -0.098 4.098 9 C 0.083 3.917 10 H 0.022 0.978 11 C -0.123 4.123 12 C -0.516 4.516 13 H 0.042 0.958 14 C 0.017 3.983 15 N -0.914 5.914 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.280 1.280 20 C -0.120 4.120 21 H 0.060 0.940 22 H 0.114 0.886 23 H 0.063 0.937 24 H 0.153 0.847 25 H 0.148 0.852 26 H 0.403 0.597 27 H 0.396 0.604 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 1.483 1.660 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C 0.008 3.992 4 C -0.191 4.191 5 C -0.186 4.186 6 C 0.060 3.940 7 N -0.419 5.419 8 C -0.102 4.102 9 C 0.064 3.936 10 H 0.040 0.960 11 C -0.181 4.181 12 C -0.554 4.554 13 H 0.061 0.939 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.775 3.225 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.206 1.206 20 C -0.139 4.139 21 H 0.079 0.921 22 H 0.132 0.868 23 H 0.082 0.918 24 H 0.170 0.830 25 H 0.166 0.834 26 H 0.232 0.768 27 H 0.227 0.773 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.548 1.277 1.685 13.712 hybrid contribution 0.803 -0.069 -0.775 1.119 sum -12.745 1.208 0.909 12.834 Atomic orbital electron populations 1.23234 0.77118 1.04972 1.01925 1.86014 1.23000 1.27163 1.90082 1.18834 0.91647 0.84966 1.03705 1.21076 1.00358 0.90939 1.06728 1.20583 0.91518 0.98502 1.07983 1.17806 0.92056 0.86367 0.97747 1.42498 1.10369 1.04194 1.84882 1.19788 0.96866 0.91373 1.02218 1.17546 0.86395 0.95697 0.93943 0.96032 1.21662 1.02397 0.98045 0.96020 1.21396 0.91642 1.38722 1.03651 0.93941 1.25628 0.97216 0.95940 0.99389 1.69987 1.02760 1.47014 1.35648 0.85642 0.78175 0.78348 0.80334 1.19875 1.20339 1.20552 1.20015 0.91665 0.97533 1.04735 0.92148 0.86814 0.91847 0.82952 0.83424 0.76760 0.77330 0.92023 0.95828 0.95647 0.92922 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.35 -11.78 10.50 -93.54 -0.98 -12.76 16 3 C 0.05 2.02 6.69 22.49 0.15 2.17 16 4 C -0.17 -5.32 9.03 22.35 0.20 -5.12 16 5 C -0.16 -5.12 9.89 22.39 0.22 -4.90 16 6 C 0.16 6.24 6.74 38.14 0.26 6.50 16 7 N -0.88 -28.88 9.01 -51.26 -0.46 -29.34 16 8 C -0.10 -4.44 4.75 -19.75 -0.09 -4.53 16 9 C 0.08 4.23 2.43 -12.29 -0.03 4.20 16 10 H 0.02 1.14 5.67 -2.39 -0.01 1.13 16 11 C -0.12 -6.22 8.74 71.98 0.63 -5.59 16 12 C -0.52 -29.10 8.29 25.60 0.21 -28.89 16 13 H 0.04 2.47 7.69 -2.91 -0.02 2.44 16 14 C 0.02 0.94 5.30 84.66 0.45 1.39 16 15 N -0.91 -52.37 11.32 21.45 0.24 -52.13 16 16 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C -0.12 -5.32 8.77 22.35 0.20 -5.13 16 21 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 22 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.14 7.66 -2.39 -0.02 1.13 16 24 H 0.15 3.49 6.29 -2.91 -0.02 3.47 16 25 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.40 10.08 8.85 -92.71 -0.82 9.26 16 27 H 0.40 14.31 6.48 -92.71 -0.60 13.71 16 28 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.02 1.24 7.20 -2.39 -0.02 1.23 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.10 4.90 7.37 -2.91 -0.02 4.88 16 Total: -1.00 -64.54 265.71 3.85 -60.68 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.28 Total: 25.29 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.31 Total: -38.33 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -0.22 Total: -81.47 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.98 Total: -12.76 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.54 3.85 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939172.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.040 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds