Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31802 * 120.56113 * 2 1 4 4 C 1.32767 * 121.00755 * 180.28529 * 3 2 1 5 5 N 1.37945 * 118.91349 * 179.70203 * 4 3 2 6 6 C 1.46495 * 119.99817 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46964 * 154.99815 * 6 5 4 8 8 C 1.52996 * 109.46983 * 274.99529 * 6 5 4 9 9 N 1.32800 * 122.17611 * 359.68072 * 4 3 2 10 10 C 1.31772 * 121.00661 * 0.02562 * 9 4 3 11 11 C 1.41166 * 120.56391 * 179.71005 * 2 1 3 12 12 C 1.41254 * 120.96862 * 0.02830 * 11 2 1 13 13 H 1.08001 * 120.00345 * 334.56813 * 12 11 2 14 14 C 1.39883 * 119.99961 * 154.57522 * 12 11 2 15 15 N 1.30891 * 120.00155 * 334.83582 * 14 12 11 16 16 Si 1.86803 * 119.99850 * 154.83482 * 14 12 11 17 17 H 1.48503 * 109.46884 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47222 * 300.00082 * 16 14 12 19 19 H 1.48498 * 109.46999 * 60.00136 * 16 14 12 20 20 H 1.09002 * 109.47237 * 270.28801 * 1 2 3 21 21 H 1.09003 * 109.47254 * 30.28816 * 1 2 3 22 22 H 1.08999 * 109.47080 * 150.28798 * 1 2 3 23 23 H 0.96998 * 119.99376 * 359.97309 * 5 4 3 24 24 H 1.09000 * 109.47506 * 34.99802 * 6 5 4 25 25 H 1.09000 * 109.47020 * 59.99689 * 7 6 5 26 26 H 1.09003 * 109.46841 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.47280 * 299.99501 * 7 6 5 28 28 H 1.09000 * 109.47223 * 300.00446 * 8 6 5 29 29 H 1.09005 * 109.47132 * 60.00478 * 8 6 5 30 30 H 1.09003 * 109.47524 * 180.02562 * 8 6 5 31 31 H 1.08007 * 120.56145 * 179.97438 * 10 9 4 32 32 H 0.97003 * 119.99841 * 354.22767 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1772 1.1349 0.0000 4 6 3.5048 1.1453 -0.0057 5 7 4.1623 2.3579 -0.0117 6 6 5.6267 2.3971 -0.0175 7 6 6.0992 3.7159 -0.6328 8 6 6.1454 2.2893 1.4179 9 7 4.2208 0.0268 -0.0053 10 6 3.6355 -1.1538 0.0003 11 6 2.2249 -1.2155 0.0062 12 6 1.5516 -2.4572 0.0118 13 1 0.5515 -2.5275 0.4134 14 6 2.1802 -3.5961 -0.5025 15 7 3.1235 -3.4732 -1.4016 16 14 1.6735 -5.2923 0.0938 17 1 2.4846 -6.3240 -0.6012 18 1 1.8976 -5.3895 1.5585 19 1 0.2351 -5.5119 -0.2025 20 1 -0.3634 0.0052 1.0277 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3633 -0.8926 -0.5093 23 1 3.6549 3.1846 -0.0121 24 1 6.0102 1.5636 -0.6059 25 1 5.7157 4.5494 -0.0443 26 1 7.1888 3.7452 -0.6366 27 1 5.7298 3.7927 -1.6553 28 1 5.7619 3.1228 2.0064 29 1 5.8088 1.3498 1.8563 30 1 7.2350 2.3189 1.4137 31 1 4.2248 -2.0589 0.0001 32 1 3.3291 -2.6009 -1.7727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944424.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = 8.733226 kcal Electronic energy + Delta-G solvation = -14880.720383 eV Core-core repulsion = 12453.757064 eV Total energy + Delta-G solvation = -2426.963319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25208 -38.01982 -36.12141 -34.70794 -33.08715 -30.77734 -29.18196 -28.06457 -26.67990 -23.83606 -23.35613 -21.41874 -19.82302 -18.75347 -17.80640 -16.13936 -16.04060 -15.70672 -15.39187 -15.27229 -14.74013 -14.25809 -14.06910 -13.63202 -13.40947 -13.04019 -12.99684 -12.91019 -12.79409 -12.44160 -12.27111 -11.93298 -11.83121 -11.38262 -11.11545 -10.89880 -10.53993 -9.73143 -9.23393 -8.87994 -6.30295 0.62130 0.79073 1.56557 1.69066 1.84905 2.35462 2.40828 2.74551 3.53357 3.75475 4.04224 4.12171 4.24559 4.28194 4.44189 4.71710 4.76070 4.83373 4.86179 4.92757 4.94584 5.04636 5.14847 5.27195 5.35209 5.42628 5.53610 5.76014 5.92986 6.28292 6.46296 6.68381 6.84815 7.06146 7.92703 8.02528 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039103 B = 0.007707 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.879304 B = 3632.232548 C = 4095.499739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.070 3.930 3 N -0.551 5.551 4 C 0.426 3.574 5 N -0.710 5.710 6 C 0.158 3.842 7 C -0.146 4.146 8 C -0.151 4.151 9 N -0.546 5.546 10 C 0.040 3.960 11 C -0.058 4.058 12 C -0.523 4.523 13 H 0.090 0.910 14 C 0.002 3.998 15 N -0.821 5.821 16 Si 1.120 2.880 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.253 1.253 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.405 0.595 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 6.064 2.485 6.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 N -0.271 5.271 4 C 0.072 3.928 5 N -0.354 5.354 6 C 0.052 3.948 7 C -0.203 4.203 8 C -0.210 4.210 9 N -0.267 5.267 10 C -0.128 4.128 11 C -0.066 4.066 12 C -0.552 4.552 13 H 0.108 0.892 14 C -0.213 4.213 15 N -0.444 5.444 16 Si 0.936 3.064 17 H -0.201 1.201 18 H -0.189 1.189 19 H -0.177 1.177 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.241 0.759 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.260 5.314 2.287 6.211 hybrid contribution -0.719 1.071 0.016 1.290 sum 1.541 6.385 2.303 6.961 Atomic orbital electron populations 1.20320 0.87288 1.02481 1.02274 1.21910 0.97471 0.86967 1.01727 1.67135 1.08115 1.31938 1.19956 1.19104 0.85102 0.87211 1.01377 1.43528 1.05397 1.02198 1.84269 1.20750 0.78629 0.99014 0.96387 1.21980 1.02681 0.95062 1.00599 1.22120 1.01528 1.00540 0.96835 1.67286 1.41598 0.98488 1.19348 1.22770 0.92634 0.93391 1.04053 1.19245 0.93836 0.95736 0.97779 1.20455 1.04181 0.93005 1.37602 0.89234 1.28500 0.91751 1.09207 0.91850 1.70650 1.25588 1.29403 1.18797 0.82962 0.77700 0.68706 0.76987 1.20126 1.18938 1.17682 0.90851 0.91177 0.90746 0.75887 0.92873 0.90935 0.89298 0.92668 0.92090 0.95858 0.90131 0.84972 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.63 9.66 71.24 0.69 -1.95 16 2 C 0.07 3.49 6.90 43.28 0.30 3.79 16 3 N -0.55 -27.20 10.36 -184.30 -1.91 -29.11 16 4 C 0.43 20.70 8.39 261.46 2.19 22.89 16 5 N -0.71 -27.17 5.20 -330.41 -1.72 -28.89 16 6 C 0.16 5.04 3.16 44.99 0.14 5.19 16 7 C -0.15 -3.23 9.38 71.98 0.68 -2.55 16 8 C -0.15 -4.49 9.49 71.98 0.68 -3.81 16 9 N -0.55 -28.37 9.13 -196.17 -1.79 -30.16 16 10 C 0.04 2.17 9.23 85.43 0.79 2.96 16 11 C -0.06 -3.11 5.32 -21.09 -0.11 -3.22 16 12 C -0.52 -26.70 8.14 23.41 0.19 -26.51 16 13 H 0.09 4.28 7.04 -2.91 -0.02 4.26 16 14 C 0.00 0.10 4.99 85.23 0.43 0.53 16 15 N -0.82 -43.81 12.35 21.82 0.27 -43.54 16 16 Si 1.12 41.33 30.00 68.60 2.06 43.38 16 17 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 19 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 20 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 21 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 22 H 0.07 2.92 6.88 -2.39 -0.02 2.90 16 23 H 0.40 13.77 8.71 -92.71 -0.81 12.96 16 24 H 0.05 2.01 7.48 -2.39 -0.02 1.99 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.13 7.41 6.57 -2.91 -0.02 7.39 16 32 H 0.28 15.68 6.65 -92.71 -0.62 15.07 16 Total: -1.00 -61.94 271.50 3.35 -58.60 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.47 Total: 32.40 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.97 Total: -2.68 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -5.15 Total: -131.70 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.06 Total: 43.38 kcal Total: -61.94 3.35 -58.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944424.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.329 kcal (2) G-P(sol) polarization free energy of solvation -61.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds