Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00100 * 2 1 4 4 C 1.50699 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00296 * 0.20949 * 4 3 2 6 6 C 1.38207 * 120.00300 * 180.23301 * 5 4 3 7 7 C 1.38259 * 119.99780 * 359.81331 * 6 5 4 8 8 C 1.38216 * 120.00322 * 359.97438 * 7 6 5 9 9 C 1.38217 * 119.99985 * 180.02562 * 4 3 2 10 10 C 1.50707 * 119.99706 * 359.97438 * 9 4 3 11 11 H 1.09002 * 109.46993 * 39.73308 * 10 9 4 12 12 N 1.46909 * 109.46799 * 159.73116 * 10 9 4 13 13 C 1.50696 * 109.47007 * 279.72685 * 10 9 4 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.08996 * 109.47313 * 300.00122 * 1 2 3 22 22 H 1.09004 * 109.46572 * 60.00346 * 1 2 3 23 23 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47125 * 60.00117 * 3 2 1 25 25 H 1.08996 * 109.47022 * 299.99832 * 3 2 1 26 26 H 1.08005 * 119.99685 * 0.06269 * 5 4 3 27 27 H 1.08002 * 120.00533 * 179.83125 * 6 5 4 28 28 H 1.08003 * 119.99910 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.99981 * 180.02562 * 8 7 6 30 30 H 1.00899 * 110.99851 * 296.04501 * 12 10 9 31 31 H 1.00900 * 110.99531 * 59.99711 * 12 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1071 -0.0618 -0.0033 6 6 5.4849 -0.1710 0.0022 7 6 6.2686 0.9681 0.0076 8 6 5.6742 2.2159 0.0071 9 6 4.2960 2.3250 0.0013 10 6 3.6479 3.6856 0.0008 11 1 2.7776 3.6737 0.6570 12 7 4.6099 4.6864 0.4814 13 6 3.2163 4.0359 -1.3999 14 1 3.3932 3.3425 -2.2088 15 6 2.5955 5.2416 -1.6488 16 7 2.2184 5.5471 -2.8711 17 14 2.2902 6.4412 -0.2498 18 1 0.9631 6.1664 0.3572 19 1 3.3483 6.2807 0.7797 20 1 2.3165 7.8303 -0.7743 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.4949 -0.9515 -0.0078 27 1 5.9494 -1.1460 0.0019 28 1 7.3452 0.8828 0.0115 29 1 6.2864 3.1056 0.0110 30 1 4.8658 4.5102 1.4414 31 1 5.4263 4.7167 -0.1107 32 1 1.7813 6.3952 -3.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -14.323585 kcal Electronic energy + Delta-G solvation = -15083.982182 eV Core-core repulsion = 12623.726294 eV Total energy + Delta-G solvation = -2460.255888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23961 -37.16500 -34.83478 -31.90172 -31.54010 -29.38425 -26.96298 -26.30159 -24.90316 -22.80574 -20.80157 -19.67824 -16.95170 -16.33610 -16.07012 -15.41218 -14.90877 -14.68481 -14.18097 -13.87939 -13.69545 -13.18894 -12.78294 -12.33107 -12.20589 -11.74343 -11.65763 -11.28255 -10.80907 -10.79140 -10.40534 -10.20320 -9.82157 -9.46427 -9.32467 -8.56988 -8.19884 -7.85983 -7.24693 -6.03582 -4.14157 1.91231 2.01105 3.47115 3.58732 3.90146 4.09004 4.34433 4.67444 5.25034 5.34395 5.43073 5.52266 5.55325 5.58865 5.72535 5.83362 5.85763 5.88264 6.10614 6.17686 6.25238 6.55900 6.58575 6.77805 6.96653 7.04601 7.19440 7.52834 7.58091 7.61887 8.15297 8.30744 8.66987 8.97370 9.60248 11.05778 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.011501 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.660156 B = 2434.071873 C = 3248.023872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.103 3.897 4 C -0.082 4.082 5 C -0.101 4.101 6 C -0.146 4.146 7 C -0.123 4.123 8 C -0.131 4.131 9 C -0.063 4.063 10 C 0.216 3.784 11 H 0.046 0.954 12 N -0.836 5.836 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.086 3.914 16 N -0.898 5.898 17 Si 0.863 3.137 18 H -0.297 1.297 19 H -0.191 1.191 20 H -0.304 1.304 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.309 0.691 31 H 0.331 0.669 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -8.621 7.753 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.027 3.973 4 C -0.083 4.083 5 C -0.119 4.119 6 C -0.165 4.165 7 C -0.141 4.141 8 C -0.149 4.149 9 C -0.065 4.065 10 C 0.107 3.893 11 H 0.063 0.937 12 N -0.365 5.365 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.119 4.119 16 N -0.534 5.534 17 Si 0.690 3.310 18 H -0.225 1.225 19 H -0.113 1.113 20 H -0.231 1.231 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.515 -8.106 7.506 11.150 hybrid contribution 0.186 0.063 0.437 0.479 sum 1.700 -8.043 7.943 11.431 Atomic orbital electron populations 1.22674 0.81401 1.02010 1.00232 1.87753 1.19330 1.28811 1.95620 1.21355 0.90309 0.83584 1.02047 1.19461 0.93961 0.93141 1.01747 1.20906 0.94283 0.97385 0.99352 1.20943 0.93908 0.97850 1.03752 1.21004 0.98998 0.92873 1.01255 1.20887 0.94417 0.97150 1.02487 1.20979 0.93446 0.97570 0.94494 1.18603 0.90917 0.82218 0.97582 0.93671 1.60026 1.18789 1.52917 1.04803 1.20663 1.39678 1.04175 0.91145 0.91201 1.24989 0.93304 0.97729 0.95833 1.69959 1.39578 1.23429 1.20464 0.87253 0.79354 0.78627 0.85742 1.22507 1.11278 1.23093 0.94346 0.93806 0.90150 0.92508 0.89623 0.85883 0.87036 0.87056 0.86505 0.88017 0.85417 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.40 -6.82 9.18 -35.23 -0.32 -7.14 16 3 C 0.10 1.95 5.13 36.01 0.18 2.13 16 4 C -0.08 -1.62 5.87 -104.62 -0.61 -2.24 16 5 C -0.10 -1.80 9.38 -39.59 -0.37 -2.17 16 6 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 7 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 8 C -0.13 -2.38 9.25 -39.58 -0.37 -2.75 16 9 C -0.06 -1.28 5.01 -104.62 -0.52 -1.80 16 10 C 0.22 4.82 1.83 -70.01 -0.13 4.69 16 11 H 0.05 1.03 6.48 -51.93 -0.34 0.70 16 12 N -0.84 -16.80 5.31 -6.64 -0.04 -16.84 16 13 C -0.52 -14.05 8.49 -34.44 -0.29 -14.35 16 14 H 0.07 2.13 7.98 -52.49 -0.42 1.71 16 15 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 16 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 17 Si 0.86 21.16 26.94 -169.99 -4.58 16.58 16 18 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.19 -4.33 5.16 56.52 0.29 -4.03 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 1.03 7.55 -51.93 -0.39 0.64 16 25 H 0.09 1.82 7.41 -51.93 -0.38 1.44 16 26 H 0.12 2.06 7.01 -52.48 -0.37 1.69 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.12 1.95 6.25 -52.49 -0.33 1.62 16 30 H 0.31 5.36 9.06 -39.29 -0.36 5.01 16 31 H 0.33 6.46 7.28 -39.29 -0.29 6.18 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -30.68 264.15 -6.30 -36.98 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.23 Total: 10.70 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.89 Total: -17.75 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.74 Total: -43.35 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.32 Total: -7.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.58 Total: 16.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.68 -6.30 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.656 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds