Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00100 * 2 1 4 4 C 1.50699 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00296 * 0.20949 * 4 3 2 6 6 C 1.38207 * 120.00300 * 180.23301 * 5 4 3 7 7 C 1.38259 * 119.99780 * 359.81331 * 6 5 4 8 8 C 1.38216 * 120.00322 * 359.97438 * 7 6 5 9 9 C 1.38217 * 119.99985 * 180.02562 * 4 3 2 10 10 C 1.50707 * 119.99706 * 359.97438 * 9 4 3 11 11 H 1.09002 * 109.46993 * 39.73308 * 10 9 4 12 12 N 1.46909 * 109.46799 * 159.73116 * 10 9 4 13 13 C 1.50696 * 109.47007 * 279.72685 * 10 9 4 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.08996 * 109.47313 * 300.00122 * 1 2 3 22 22 H 1.09004 * 109.46572 * 60.00346 * 1 2 3 23 23 H 1.09004 * 109.47285 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47125 * 60.00117 * 3 2 1 25 25 H 1.08996 * 109.47022 * 299.99832 * 3 2 1 26 26 H 1.08005 * 119.99685 * 0.06269 * 5 4 3 27 27 H 1.08002 * 120.00533 * 179.83125 * 6 5 4 28 28 H 1.08003 * 119.99910 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.99981 * 180.02562 * 8 7 6 30 30 H 1.00899 * 110.99851 * 296.04501 * 12 10 9 31 31 H 1.00900 * 110.99531 * 59.99711 * 12 10 9 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1071 -0.0618 -0.0033 6 6 5.4849 -0.1710 0.0022 7 6 6.2686 0.9681 0.0076 8 6 5.6742 2.2159 0.0071 9 6 4.2960 2.3250 0.0013 10 6 3.6479 3.6856 0.0008 11 1 2.7776 3.6737 0.6570 12 7 4.6099 4.6864 0.4814 13 6 3.2163 4.0359 -1.3999 14 1 3.3932 3.3425 -2.2088 15 6 2.5955 5.2416 -1.6488 16 7 2.2184 5.5471 -2.8711 17 14 2.2902 6.4412 -0.2498 18 1 0.9631 6.1664 0.3572 19 1 3.3483 6.2807 0.7797 20 1 2.3165 7.8303 -0.7743 21 1 -0.3634 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.4949 -0.9515 -0.0078 27 1 5.9494 -1.1460 0.0019 28 1 7.3452 0.8828 0.0115 29 1 6.2864 3.1056 0.0110 30 1 4.8658 4.5102 1.4414 31 1 5.4263 4.7167 -0.1107 32 1 1.7813 6.3952 -3.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -35.814476 kcal Electronic energy + Delta-G solvation = -15084.914097 eV Core-core repulsion = 12623.726294 eV Total energy + Delta-G solvation = -2461.187803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66707 -38.50730 -36.52729 -33.98504 -32.91923 -30.83786 -28.44728 -28.01412 -26.24375 -24.50347 -22.22678 -21.26320 -18.99090 -17.74853 -17.45090 -16.79617 -16.67730 -16.15979 -15.86892 -15.28581 -15.18598 -14.75760 -14.31535 -14.09208 -13.53924 -13.42918 -13.06551 -12.74558 -12.67101 -12.31061 -12.07520 -11.76079 -11.46421 -11.41478 -10.82140 -10.70305 -9.59614 -9.33385 -8.92365 -8.23031 -6.35965 0.53207 0.61016 1.50294 1.58425 1.94647 2.61055 2.78682 2.95112 3.15219 3.98181 4.11430 4.19573 4.22718 4.29729 4.35214 4.48793 4.55514 4.67706 4.72989 4.77502 4.83229 5.05282 5.18284 5.25566 5.49108 5.61934 5.68337 5.84376 6.13809 6.20638 6.23995 6.51987 6.78704 7.04195 7.41484 8.90192 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.011501 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.660156 B = 2434.071873 C = 3248.023872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.112 3.888 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.138 4.138 9 C -0.092 4.092 10 C 0.227 3.773 11 H 0.041 0.959 12 N -0.837 5.837 13 C -0.507 4.507 14 H 0.020 0.980 15 C 0.027 3.973 16 N -0.951 5.951 17 Si 0.925 3.075 18 H -0.301 1.301 19 H -0.154 1.154 20 H -0.316 1.316 21 H 0.050 0.950 22 H 0.036 0.964 23 H 0.111 0.889 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.131 0.869 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.130 0.870 30 H 0.332 0.668 31 H 0.337 0.663 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -9.708 9.932 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.036 3.964 4 C -0.106 4.106 5 C -0.128 4.128 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.156 4.156 9 C -0.094 4.094 10 C 0.117 3.883 11 H 0.059 0.941 12 N -0.368 5.368 13 C -0.545 4.545 14 H 0.039 0.961 15 C -0.171 4.171 16 N -0.590 5.590 17 Si 0.750 3.250 18 H -0.228 1.228 19 H -0.075 1.075 20 H -0.244 1.244 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.129 0.871 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.051 -9.219 9.708 13.731 hybrid contribution -0.259 0.227 -0.292 0.452 sum 2.792 -8.992 9.416 13.316 Atomic orbital electron populations 1.22947 0.79524 1.04133 1.00508 1.87729 1.21386 1.27601 1.95607 1.21091 0.90718 0.84199 1.00406 1.19658 0.94150 0.94049 1.02783 1.21105 0.95509 0.96790 0.99373 1.21388 0.93131 0.99634 1.01405 1.21418 1.00925 0.91891 0.99483 1.21126 0.93546 0.98831 1.02117 1.20864 0.94704 0.96566 0.97275 1.18211 0.91592 0.84129 0.94352 0.94087 1.59687 1.18820 1.51968 1.06324 1.20808 1.38585 1.02590 0.92544 0.96142 1.25887 0.93395 0.99830 0.98026 1.70110 1.41870 1.24140 1.22926 0.86375 0.79902 0.75239 0.83444 1.22848 1.07473 1.24436 0.93104 0.94522 0.87114 0.92094 0.93326 0.85093 0.83458 0.83448 0.85261 0.85496 0.84795 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 11.01 113.37 1.25 1.90 16 2 O -0.40 -13.79 9.18 -148.98 -1.37 -15.16 16 3 C 0.11 4.34 5.13 71.24 0.37 4.70 16 4 C -0.11 -4.14 5.87 -19.87 -0.12 -4.26 16 5 C -0.11 -3.72 9.38 22.27 0.21 -3.51 16 6 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 7 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 8 C -0.14 -4.70 9.25 22.27 0.21 -4.50 16 9 C -0.09 -3.68 5.01 -19.86 -0.10 -3.78 16 10 C 0.23 10.05 1.83 43.42 0.08 10.13 16 11 H 0.04 1.85 6.48 -2.39 -0.02 1.84 16 12 N -0.84 -31.79 5.31 -174.93 -0.93 -32.72 16 13 C -0.51 -28.35 8.49 25.60 0.22 -28.13 16 14 H 0.02 1.31 7.98 -2.91 -0.02 1.29 16 15 C 0.03 1.57 5.47 84.66 0.46 2.04 16 16 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 17 Si 0.93 44.07 26.94 68.60 1.85 45.92 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 19 H -0.15 -6.42 5.16 99.48 0.51 -5.91 16 20 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 2.24 7.55 -2.39 -0.02 2.23 16 25 H 0.05 2.21 7.41 -2.39 -0.02 2.19 16 26 H 0.13 4.15 7.01 -2.91 -0.02 4.13 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.13 3.97 6.25 -2.91 -0.02 3.95 16 30 H 0.33 10.44 9.06 -89.70 -0.81 9.62 16 31 H 0.34 12.43 7.28 -89.69 -0.65 11.78 16 32 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -68.45 264.15 2.34 -66.10 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.53 Total: 28.10 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 3.02 Total: -32.34 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -0.63 Total: -92.63 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.37 Total: -15.16 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.85 Total: 45.92 kcal Total: -68.45 2.34 -66.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.290 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds