Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00333 * 2 1 4 4 C 1.38615 * 120.01764 * 0.02562 * 3 2 1 5 5 C 1.38789 * 119.86924 * 179.97438 * 4 3 2 6 6 N 1.39670 * 120.04514 * 179.97438 * 5 4 3 7 7 C 1.38975 * 119.91300 * 0.02562 * 5 4 3 8 8 C 1.38112 * 120.03047 * 359.97438 * 7 5 4 9 9 C 1.50702 * 119.93484 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47359 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46826 * 299.97810 * 9 8 7 12 12 C 1.50696 * 109.47292 * 59.97652 * 9 8 7 13 13 H 1.08005 * 119.99536 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00479 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00062 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 119.99684 * 0.02562 * 14 12 9 17 17 H 1.48505 * 109.46932 * 89.99827 * 16 14 12 18 18 H 1.48498 * 109.47290 * 209.99675 * 16 14 12 19 19 H 1.48505 * 109.47262 * 329.99983 * 16 14 12 20 20 C 1.38215 * 120.13122 * 0.02562 * 8 7 5 21 21 H 1.09006 * 109.46740 * 60.00391 * 1 2 3 22 22 H 1.08998 * 109.47466 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47162 * 300.00657 * 1 2 3 24 24 H 1.07994 * 120.06226 * 359.96226 * 4 3 2 25 25 H 0.97006 * 119.99733 * 0.02562 * 6 5 4 26 26 H 0.96996 * 120.00276 * 180.02562 * 6 5 4 27 27 H 1.07994 * 119.98464 * 179.97438 * 7 5 4 28 28 H 1.09006 * 109.46619 * 179.97438 * 11 9 8 29 29 H 1.08997 * 109.47410 * 299.99624 * 11 9 8 30 30 H 1.08997 * 109.47355 * 60.00359 * 11 9 8 31 31 H 0.97005 * 119.99801 * 179.97438 * 15 14 12 32 32 H 1.08005 * 119.95346 * 180.26994 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9248 3.6086 0.0011 6 7 1.1681 4.7825 0.0011 7 6 3.3129 3.6755 0.0005 8 6 4.0609 2.5145 0.0000 9 6 5.5661 2.5896 0.0000 10 1 5.9802 1.5813 0.0000 11 6 6.0394 3.3355 -1.2493 12 6 6.0324 3.3241 1.2304 13 1 5.3110 3.6986 1.9416 14 6 7.3800 3.5170 1.4490 15 7 7.7869 4.1576 2.5230 16 14 8.6278 2.8685 0.2193 17 1 8.8984 3.9080 -0.8062 18 1 9.8893 2.5300 0.9259 19 1 8.0876 1.6521 -0.4394 20 6 3.4318 1.2838 -0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2129 2.3187 0.0003 25 1 0.1993 4.7350 0.0011 26 1 1.6114 5.6453 0.0011 27 1 3.8070 4.6358 0.0005 28 1 7.1281 3.3902 -1.2490 29 1 5.7022 2.8042 -2.1393 30 1 5.6254 4.3437 -1.2492 31 1 8.7351 4.2930 2.6769 32 1 4.0196 0.3777 0.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -16.541991 kcal Electronic energy + Delta-G solvation = -14823.200264 eV Core-core repulsion = 12362.848178 eV Total energy + Delta-G solvation = -2460.352086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68423 -37.54980 -35.11460 -32.99733 -31.30728 -28.65473 -28.41208 -26.71740 -24.99785 -22.54753 -21.58012 -19.64921 -17.33342 -16.86706 -16.21088 -15.43063 -15.35681 -15.06586 -14.80288 -14.51270 -13.16423 -13.06004 -12.64552 -12.55106 -12.13121 -11.91352 -11.41990 -11.26507 -11.06569 -10.96258 -10.73131 -10.17177 -9.93013 -9.51196 -9.30612 -8.97588 -8.53005 -7.70305 -6.97469 -6.03799 -4.02918 2.13983 2.26313 3.30449 3.41610 3.43987 3.62599 4.21341 4.44146 4.53262 5.18500 5.26630 5.29344 5.39454 5.54787 5.74659 5.89137 6.04878 6.27055 6.31722 6.45470 6.56142 6.73740 6.79801 6.91771 7.05853 7.22013 7.38779 7.59907 7.72263 7.84463 8.03002 8.11206 8.55774 9.01450 9.57433 11.09081 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035231 B = 0.007977 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.562800 B = 3509.356856 C = 3867.900244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.159 3.841 4 C -0.303 4.303 5 C 0.240 3.760 6 N -0.882 5.882 7 C -0.211 4.211 8 C 0.052 3.948 9 C 0.036 3.964 10 H 0.038 0.962 11 C -0.142 4.142 12 C -0.505 4.505 13 H 0.077 0.923 14 C 0.070 3.930 15 N -0.901 5.901 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.265 1.265 20 C -0.211 4.211 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.051 0.949 24 H 0.115 0.885 25 H 0.390 0.610 26 H 0.397 0.603 27 H 0.124 0.876 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 -2.868 -6.813 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.114 3.886 4 C -0.327 4.327 5 C 0.136 3.864 6 N -0.421 5.421 7 C -0.234 4.234 8 C 0.051 3.949 9 C 0.018 3.982 10 H 0.056 0.944 11 C -0.199 4.199 12 C -0.543 4.543 13 H 0.095 0.905 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.190 1.190 20 C -0.231 4.231 21 H 0.068 0.932 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.132 0.868 25 H 0.217 0.783 26 H 0.225 0.775 27 H 0.142 0.858 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.003 -3.044 -6.706 14.944 hybrid contribution 0.235 0.259 -0.478 0.592 sum -12.769 -2.785 -7.184 14.913 Atomic orbital electron populations 1.22914 0.79522 1.02973 1.00963 1.86048 1.20521 1.27788 1.89095 1.18657 0.91953 0.82968 0.95010 1.20288 0.98583 0.91253 1.22563 1.17487 0.90964 0.85880 0.92067 1.42390 1.07945 1.05680 1.86077 1.20423 0.90425 0.99577 1.12963 1.19700 0.96664 0.90594 0.87959 1.18385 0.87373 0.97434 0.95056 0.94418 1.22140 0.99648 1.00735 0.97404 1.20949 0.92792 1.35475 1.05048 0.90475 1.24991 0.98299 0.94617 0.95261 1.69892 1.15459 1.41765 1.26769 0.86847 0.80509 0.79955 0.80891 1.20652 1.22569 1.19010 1.20154 0.90493 0.98453 1.14008 0.93176 0.88982 0.93081 0.86756 0.78274 0.77476 0.85833 0.94107 0.94973 0.92710 0.92667 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.25 10.49 -19.41 -0.20 -5.46 16 3 C 0.16 2.91 6.68 -39.24 -0.26 2.65 16 4 C -0.30 -5.03 8.88 -39.24 -0.35 -5.38 16 5 C 0.24 4.12 6.75 -83.81 -0.57 3.55 16 6 N -0.88 -11.39 9.09 32.40 0.29 -11.10 16 7 C -0.21 -4.25 8.55 -39.35 -0.34 -4.59 16 8 C 0.05 1.13 4.73 -104.68 -0.50 0.64 16 9 C 0.04 0.87 2.07 -92.92 -0.19 0.68 16 10 H 0.04 0.92 6.93 -51.93 -0.36 0.56 16 11 C -0.14 -3.12 8.49 37.16 0.32 -2.81 16 12 C -0.50 -14.23 8.82 -34.44 -0.30 -14.53 16 13 H 0.08 2.37 7.84 -52.48 -0.41 1.96 16 14 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 16 Si 0.89 22.05 24.37 -169.99 -4.14 17.91 16 17 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 20 C -0.21 -4.31 9.61 -39.39 -0.38 -4.69 16 21 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 24 H 0.11 1.56 6.30 -52.49 -0.33 1.23 16 25 H 0.39 3.98 8.84 -40.82 -0.36 3.62 16 26 H 0.40 4.65 8.84 -40.82 -0.36 4.29 16 27 H 0.12 2.52 7.57 -52.49 -0.40 2.12 16 28 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.12 2.39 7.94 -52.48 -0.42 1.98 16 LS Contribution 263.08 15.07 3.96 3.96 Total: -1.00 -31.72 263.08 -5.00 -36.72 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.01 Total: 6.01 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.67 Total: -21.21 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.07 Total: -37.93 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.72 -5.00 -36.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.173 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds