Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48505 * 109.46904 * 90.00738 * 3 2 1 5 5 H 1.48498 * 109.47024 * 210.00352 * 3 2 1 6 6 H 1.48500 * 109.47413 * 330.00889 * 3 2 1 7 7 C 1.37878 * 119.99608 * 179.73240 * 2 1 3 8 8 H 1.07998 * 120.00099 * 7.25931 * 7 2 1 9 9 C 1.50703 * 119.99815 * 187.25646 * 7 2 1 10 10 H 1.09002 * 109.46957 * 304.72838 * 9 7 2 11 11 C 1.53003 * 109.46794 * 64.72288 * 9 7 2 12 12 N 1.46904 * 109.46997 * 185.08655 * 11 9 7 13 13 C 1.50696 * 109.47213 * 184.72281 * 9 7 2 14 14 C 1.39867 * 126.04378 * 299.69427 * 13 9 7 15 15 N 1.30832 * 108.20344 * 179.81671 * 14 13 9 16 16 N 1.40081 * 108.20535 * 0.43820 * 15 14 13 17 17 C 1.46504 * 126.03955 * 179.73634 * 16 15 14 18 18 C 1.52995 * 117.50197 * 163.59759 * 17 16 15 19 19 C 1.53000 * 60.00370 * 252.51293 * 18 17 16 20 20 C 1.34945 * 107.92741 * 359.72083 * 16 15 14 21 21 H 0.96996 * 120.00152 * 174.94263 * 1 2 3 22 22 H 1.08996 * 109.47295 * 305.08790 * 11 9 7 23 23 H 1.09003 * 109.46797 * 65.09357 * 11 9 7 24 24 H 1.00900 * 110.99743 * 179.97438 * 12 11 9 25 25 H 1.00897 * 111.00102 * 303.95910 * 12 11 9 26 26 H 1.08000 * 125.89192 * 359.97438 * 14 13 9 27 27 H 1.09004 * 115.55108 * 309.31303 * 17 16 15 28 28 H 1.09008 * 117.49617 * 0.02562 * 18 17 16 29 29 H 1.08994 * 117.50353 * 145.02346 * 18 17 16 30 30 H 1.08998 * 117.49958 * 252.51071 * 19 18 17 31 31 H 1.09001 * 117.52001 * 107.47614 * 19 18 17 32 32 H 1.08003 * 126.12996 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6998 7 6 2.0045 -1.1941 0.0056 8 1 1.4710 -2.1261 -0.1083 9 6 3.5025 -1.1986 0.1705 10 1 3.9540 -0.5658 -0.5936 11 6 3.8646 -0.6615 1.5566 12 7 5.3248 -0.5513 1.6730 13 6 4.0195 -2.6068 0.0265 14 6 3.6723 -3.6972 0.8308 15 7 4.3197 -4.7479 0.3965 16 7 5.1081 -4.3566 -0.6933 17 6 5.9952 -5.2251 -1.4713 18 6 6.4668 -4.7142 -2.8341 19 6 5.4339 -5.8401 -2.7549 20 6 4.9062 -3.0385 -0.9001 21 1 -0.4850 -0.8367 -0.0740 22 1 3.4139 0.3212 1.6946 23 1 3.4898 -1.3437 2.3198 24 1 5.5896 -0.1981 2.5803 25 1 5.7704 -1.4369 1.4852 26 1 2.9862 -3.6759 1.6645 27 1 6.6941 -5.8258 -0.8892 28 1 6.1174 -3.7317 -3.1518 29 1 7.4763 -4.9786 -3.1489 30 1 5.7638 -6.8452 -3.0175 31 1 4.4046 -5.5989 -3.0203 32 1 5.3688 -2.4361 -1.6679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = 103.050380 kcal Electronic energy + Delta-G solvation = -14930.772434 eV Core-core repulsion = 12507.899014 eV Total energy + Delta-G solvation = -2422.873420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71285 -37.19232 -35.27491 -32.34056 -30.61381 -30.16141 -27.52186 -23.25192 -22.94720 -22.70141 -21.32219 -19.77939 -18.99768 -17.40083 -16.54535 -15.66338 -15.19227 -14.34913 -13.93328 -13.76819 -13.51331 -13.14073 -12.90004 -12.27654 -11.96068 -11.69296 -11.34886 -11.09363 -10.82614 -10.77839 -10.55829 -10.27652 -9.74927 -9.54375 -8.82914 -8.71142 -8.36347 -7.96159 -7.58323 -6.35649 -4.03758 2.40283 2.80509 3.44040 3.53152 3.54077 3.59297 3.69363 4.48690 4.53415 4.62122 4.80330 5.23541 5.29549 5.37738 5.51216 5.54883 5.62815 5.80823 5.89991 6.16740 6.37436 6.39487 6.57901 6.70271 7.07238 7.29434 7.52000 7.60122 7.82168 8.07593 8.21371 8.33962 8.43808 8.96164 9.66594 11.01218 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.008146 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.992367 B = 3436.607770 C = 3591.374341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 1.055 2.945 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.581 4.581 8 H 0.057 0.943 9 C 0.084 3.916 10 H 0.039 0.961 11 C 0.063 3.937 12 N -0.855 5.855 13 C -0.168 4.168 14 C 0.053 3.947 15 N -0.309 5.309 16 N -0.362 5.362 17 C 0.094 3.906 18 C -0.172 4.172 19 C -0.182 4.182 20 C 0.028 3.972 21 H 0.266 0.734 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.324 0.676 25 H 0.332 0.668 26 H 0.175 0.825 27 H 0.131 0.869 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.193 -7.100 -2.561 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.885 3.115 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.220 1.220 7 C -0.620 4.620 8 H 0.075 0.925 9 C 0.064 3.936 10 H 0.057 0.943 11 C -0.068 4.068 12 N -0.383 5.383 13 C -0.179 4.179 14 C -0.133 4.133 15 N -0.129 5.129 16 N -0.145 5.145 17 C -0.010 4.010 18 C -0.210 4.210 19 C -0.220 4.220 20 C -0.114 4.114 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.134 0.866 25 H 0.144 0.856 26 H 0.192 0.808 27 H 0.148 0.852 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.214 -6.254 -3.009 14.925 hybrid contribution -0.232 -1.577 0.606 1.705 sum 12.982 -7.831 -2.403 15.350 Atomic orbital electron populations 1.70823 1.06811 1.30591 1.46709 1.25826 0.96325 1.02463 0.93218 0.83848 0.75321 0.75335 0.76981 1.21297 1.19825 1.22002 1.22035 0.90373 0.95087 1.54520 0.92506 1.17717 0.96424 0.87025 0.92484 0.94283 1.22336 0.85322 0.99722 0.99375 1.58938 1.10268 1.33700 1.35360 1.20453 1.00702 0.98717 0.98014 1.23747 0.98847 0.90277 1.00394 1.77215 1.10230 1.23600 1.01903 1.47675 1.35202 1.06241 1.25420 1.21468 0.95554 0.97835 0.86142 1.23368 1.00372 1.00206 0.97080 1.23444 0.99886 0.98311 1.00377 1.22172 1.01874 0.85010 1.02381 0.92371 0.91871 0.96244 0.86596 0.85633 0.80762 0.85177 0.87651 0.87083 0.87592 0.88067 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.70 55.43 0.76 -27.42 16 2 C 0.03 0.74 5.42 -17.82 -0.10 0.64 16 3 Si 1.06 25.81 25.38 -169.99 -4.31 21.49 16 4 H -0.29 -6.68 6.72 56.52 0.38 -6.30 16 5 H -0.27 -6.33 6.38 56.52 0.36 -5.97 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.58 -16.18 8.78 -34.44 -0.30 -16.49 16 8 H 0.06 1.73 7.93 -52.49 -0.42 1.31 16 9 C 0.08 1.98 1.92 -92.92 -0.18 1.80 16 10 H 0.04 0.96 6.61 -51.93 -0.34 0.62 16 11 C 0.06 1.35 5.79 -3.82 -0.02 1.33 16 12 N -0.85 -15.52 9.62 -10.37 -0.10 -15.62 16 13 C -0.17 -3.55 3.78 -105.05 -0.40 -3.95 16 14 C 0.05 1.10 11.39 -17.37 -0.20 0.90 16 15 N -0.31 -6.10 12.58 30.62 0.39 -5.71 16 16 N -0.36 -6.26 3.94 -54.86 -0.22 -6.48 16 17 C 0.09 1.20 7.14 -67.93 -0.48 0.71 16 18 C -0.17 -1.69 9.98 -26.73 -0.27 -1.96 16 19 C -0.18 -1.99 10.46 -26.73 -0.28 -2.26 16 20 C 0.03 0.52 10.71 -17.22 -0.18 0.34 16 21 H 0.27 8.20 8.72 -40.82 -0.36 7.85 16 22 H 0.06 1.46 4.40 -51.93 -0.23 1.23 16 23 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 24 H 0.32 5.04 9.08 -39.29 -0.36 4.68 16 25 H 0.33 5.78 8.07 -39.29 -0.32 5.46 16 26 H 0.18 3.46 8.06 -52.49 -0.42 3.04 16 27 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.11 1.11 7.01 -51.92 -0.36 0.74 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.16 2.61 7.23 -52.48 -0.38 2.23 16 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -31.81 268.34 -5.99 -37.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.14 Total: 10.83 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.41 Total: -18.94 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.83 Total: -55.23 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.31 Total: 21.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.81 -5.99 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.858 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds