Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48505 * 109.46904 * 90.00738 * 3 2 1 5 5 H 1.48498 * 109.47024 * 210.00352 * 3 2 1 6 6 H 1.48500 * 109.47413 * 330.00889 * 3 2 1 7 7 C 1.37878 * 119.99608 * 179.73240 * 2 1 3 8 8 H 1.07998 * 120.00099 * 7.25931 * 7 2 1 9 9 C 1.50703 * 119.99815 * 187.25646 * 7 2 1 10 10 H 1.09002 * 109.46957 * 304.72838 * 9 7 2 11 11 C 1.53003 * 109.46794 * 64.72288 * 9 7 2 12 12 N 1.46904 * 109.46997 * 185.08655 * 11 9 7 13 13 C 1.50696 * 109.47213 * 184.72281 * 9 7 2 14 14 C 1.39867 * 126.04378 * 299.69427 * 13 9 7 15 15 N 1.30832 * 108.20344 * 179.81671 * 14 13 9 16 16 N 1.40081 * 108.20535 * 0.43820 * 15 14 13 17 17 C 1.46504 * 126.03955 * 179.73634 * 16 15 14 18 18 C 1.52995 * 117.50197 * 163.59759 * 17 16 15 19 19 C 1.53000 * 60.00370 * 252.51293 * 18 17 16 20 20 C 1.34945 * 107.92741 * 359.72083 * 16 15 14 21 21 H 0.96996 * 120.00152 * 174.94263 * 1 2 3 22 22 H 1.08996 * 109.47295 * 305.08790 * 11 9 7 23 23 H 1.09003 * 109.46797 * 65.09357 * 11 9 7 24 24 H 1.00900 * 110.99743 * 179.97438 * 12 11 9 25 25 H 1.00897 * 111.00102 * 303.95910 * 12 11 9 26 26 H 1.08000 * 125.89192 * 359.97438 * 14 13 9 27 27 H 1.09004 * 115.55108 * 309.31303 * 17 16 15 28 28 H 1.09008 * 117.49617 * 0.02562 * 18 17 16 29 29 H 1.08994 * 117.50353 * 145.02346 * 18 17 16 30 30 H 1.08998 * 117.49958 * 252.51071 * 19 18 17 31 31 H 1.09001 * 117.52001 * 107.47614 * 19 18 17 32 32 H 1.08003 * 126.12996 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6998 7 6 2.0045 -1.1941 0.0056 8 1 1.4710 -2.1261 -0.1083 9 6 3.5025 -1.1986 0.1705 10 1 3.9540 -0.5658 -0.5936 11 6 3.8646 -0.6615 1.5566 12 7 5.3248 -0.5513 1.6730 13 6 4.0195 -2.6068 0.0265 14 6 3.6723 -3.6972 0.8308 15 7 4.3197 -4.7479 0.3965 16 7 5.1081 -4.3566 -0.6933 17 6 5.9952 -5.2251 -1.4713 18 6 6.4668 -4.7142 -2.8341 19 6 5.4339 -5.8401 -2.7549 20 6 4.9062 -3.0385 -0.9001 21 1 -0.4850 -0.8367 -0.0740 22 1 3.4139 0.3212 1.6946 23 1 3.4898 -1.3437 2.3198 24 1 5.5896 -0.1981 2.5803 25 1 5.7704 -1.4369 1.4852 26 1 2.9862 -3.6759 1.6645 27 1 6.6941 -5.8258 -0.8892 28 1 6.1174 -3.7317 -3.1518 29 1 7.4763 -4.9786 -3.1489 30 1 5.7638 -6.8452 -3.0175 31 1 4.4046 -5.5989 -3.0203 32 1 5.3688 -2.4361 -1.6679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = 79.342912 kcal Electronic energy + Delta-G solvation = -14931.800467 eV Core-core repulsion = 12507.899014 eV Total energy + Delta-G solvation = -2423.901453 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17151 -38.26698 -36.95312 -34.39982 -32.15177 -31.68825 -29.22501 -25.11804 -24.32739 -23.62664 -22.92033 -21.11101 -20.61674 -19.44040 -17.88653 -16.95143 -16.55313 -15.99945 -15.51606 -15.40778 -14.95346 -14.82118 -14.25093 -13.82513 -13.68275 -13.10229 -12.91080 -12.54528 -12.41523 -12.20635 -11.81531 -11.60109 -11.58795 -11.24246 -10.85154 -10.55395 -10.19999 -9.50567 -9.18982 -8.59199 -6.33408 0.95008 1.49340 1.56673 1.58635 1.78554 1.96629 2.51169 2.63457 3.13036 3.56319 3.70556 3.92456 3.94319 3.99312 4.11177 4.45350 4.63293 4.65979 4.76778 4.83118 4.86529 4.94543 5.05150 5.09558 5.30111 5.61607 5.80844 5.99656 6.08717 6.26368 6.39176 6.62255 6.76756 6.80703 7.46136 8.70559 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.008146 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.992367 B = 3436.607770 C = 3591.374341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.025 4.025 3 Si 1.095 2.905 4 H -0.267 1.267 5 H -0.249 1.249 6 H -0.296 1.296 7 C -0.577 4.577 8 H 0.014 0.986 9 C 0.091 3.909 10 H 0.036 0.964 11 C 0.072 3.928 12 N -0.845 5.845 13 C -0.202 4.202 14 C 0.037 3.963 15 N -0.323 5.323 16 N -0.349 5.349 17 C 0.056 3.944 18 C -0.145 4.145 19 C -0.180 4.180 20 C 0.044 3.956 21 H 0.249 0.751 22 H 0.052 0.948 23 H 0.012 0.988 24 H 0.342 0.658 25 H 0.339 0.661 26 H 0.168 0.832 27 H 0.150 0.850 28 H 0.100 0.900 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.490 -7.113 -3.465 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.222 4.222 3 Si 0.918 3.082 4 H -0.193 1.193 5 H -0.173 1.173 6 H -0.223 1.223 7 C -0.615 4.615 8 H 0.033 0.967 9 C 0.070 3.930 10 H 0.054 0.946 11 C -0.059 4.059 12 N -0.375 5.375 13 C -0.213 4.213 14 C -0.148 4.148 15 N -0.145 5.145 16 N -0.132 5.132 17 C -0.045 4.045 18 C -0.183 4.183 19 C -0.218 4.218 20 C -0.101 4.101 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.030 0.970 24 H 0.155 0.845 25 H 0.152 0.848 26 H 0.185 0.815 27 H 0.167 0.833 28 H 0.119 0.881 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 16.541 -6.316 -3.900 18.130 hybrid contribution -1.203 -1.751 0.808 2.273 sum 15.337 -8.067 -3.092 17.603 Atomic orbital electron populations 1.70950 1.08141 1.29582 1.49885 1.27203 0.96218 1.06185 0.92550 0.83375 0.75068 0.71514 0.78271 1.19327 1.17292 1.22275 1.22220 0.93129 0.93209 1.52982 0.96718 1.17483 0.93155 0.88886 0.93460 0.94599 1.21999 0.87526 0.98584 0.97815 1.58785 1.07767 1.34153 1.36787 1.20279 1.03142 0.97791 1.00116 1.23675 0.99530 0.90720 1.00861 1.77147 1.10824 1.23408 1.03155 1.48034 1.34242 1.06480 1.24447 1.22091 0.96189 0.99156 0.87109 1.23549 1.01782 0.99459 0.93494 1.23497 0.99183 1.00484 0.98605 1.22473 1.00489 0.85636 1.01466 0.94161 0.93025 0.96965 0.84521 0.84835 0.81538 0.83264 0.88142 0.83392 0.84722 0.90566 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.50 13.70 21.45 0.29 -60.20 16 2 C -0.03 -1.47 5.42 84.65 0.46 -1.01 16 3 Si 1.09 51.57 25.38 68.60 1.74 53.31 16 4 H -0.27 -11.75 6.72 99.48 0.67 -11.08 16 5 H -0.25 -10.69 6.38 99.48 0.64 -10.05 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.58 -33.03 8.78 25.60 0.22 -32.80 16 8 H 0.01 0.93 7.93 -2.91 -0.02 0.91 16 9 C 0.09 4.24 1.92 -12.29 -0.02 4.21 16 10 H 0.04 1.70 6.61 -2.39 -0.02 1.69 16 11 C 0.07 3.02 5.79 86.30 0.50 3.52 16 12 N -0.85 -28.55 9.62 -186.71 -1.80 -30.34 16 13 C -0.20 -8.47 3.78 -20.14 -0.08 -8.54 16 14 C 0.04 1.54 11.39 85.24 0.97 2.51 16 15 N -0.32 -12.65 12.58 -57.03 -0.72 -13.37 16 16 N -0.35 -11.47 3.94 -327.47 -1.29 -12.76 16 17 C 0.06 1.26 7.14 44.99 0.32 1.58 16 18 C -0.14 -2.23 9.98 30.59 0.31 -1.92 16 19 C -0.18 -3.38 10.46 30.60 0.32 -3.06 16 20 C 0.04 1.55 10.71 83.54 0.89 2.45 16 21 H 0.25 16.22 8.72 -92.71 -0.81 15.42 16 22 H 0.05 2.30 4.40 -2.39 -0.01 2.29 16 23 H 0.01 0.52 7.87 -2.39 -0.02 0.50 16 24 H 0.34 9.66 9.08 -89.69 -0.81 8.84 16 25 H 0.34 10.95 8.07 -89.70 -0.72 10.23 16 26 H 0.17 6.97 8.06 -2.91 -0.02 6.95 16 27 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.10 1.71 7.01 -2.38 -0.02 1.69 16 29 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.19 5.46 7.23 -2.91 -0.02 5.44 16 Total: -1.00 -70.92 268.34 1.58 -69.34 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.54 Total: 27.08 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 3.89 Total: -33.06 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -3.51 Total: -116.68 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 1.74 Total: 53.31 kcal Total: -70.92 1.58 -69.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.681 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds