Wall clock time and date at job start Mon Mar 30 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31254 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00134 * 3 2 1 7 7 C 1.39014 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.37571 * 119.99843 * 0.27738 * 7 2 1 10 10 C 1.36661 * 126.88369 * 179.43498 * 9 7 2 11 11 C 1.34952 * 106.72361 * 179.84614 * 10 9 7 12 12 C 1.50707 * 125.48330 * 180.15993 * 11 10 9 13 13 C 1.52999 * 109.47468 * 35.33585 * 12 11 10 14 14 C 1.52995 * 109.47310 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.46986 * 59.99863 * 14 13 12 16 16 C 1.52999 * 109.47208 * 300.00200 * 15 14 13 17 17 C 1.52995 * 109.47097 * 59.99672 * 16 15 14 18 18 N 1.33454 * 109.02754 * 0.42499 * 11 10 9 19 19 N 1.28754 * 109.98572 * 359.73033 * 18 11 10 20 20 H 0.97005 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.63964 * 359.97438 * 10 9 7 22 22 H 1.08996 * 109.46807 * 155.33653 * 12 11 10 23 23 H 1.09000 * 109.46942 * 300.00303 * 13 12 11 24 24 H 1.08996 * 109.47011 * 59.99882 * 13 12 11 25 25 H 1.09000 * 109.47447 * 300.00093 * 14 13 12 26 26 H 1.09003 * 109.47344 * 179.97438 * 14 13 12 27 27 H 1.08999 * 109.47098 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.46839 * 59.99858 * 15 14 13 29 29 H 1.09000 * 109.46787 * 300.00367 * 16 15 14 30 30 H 1.08996 * 109.47011 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47131 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47214 * 60.00639 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.7065 1.3464 0.0006 5 1 1.8878 2.3964 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0076 -1.2039 -0.0005 8 1 3.0876 -1.2038 -0.0010 9 7 1.3198 -2.3953 -0.0068 10 6 1.8563 -3.6521 -0.0190 11 6 0.8201 -4.5167 -0.0177 12 6 0.9346 -6.0194 -0.0252 13 6 2.1508 -6.4424 0.8010 14 6 2.2667 -7.9679 0.7939 15 6 2.4316 -8.4602 -0.6454 16 6 1.2153 -8.0372 -1.4716 17 6 1.0995 -6.5116 -1.4644 18 7 -0.3223 -3.8267 -0.0147 19 7 -0.0734 -2.5635 -0.0082 20 1 -0.4850 0.8401 0.0004 21 1 2.9063 -3.9046 -0.0259 22 1 0.0331 -6.4545 0.4061 23 1 3.0523 -6.0071 0.3696 24 1 2.0331 -6.0921 1.8264 25 1 1.3652 -8.4028 1.2255 26 1 3.1334 -8.2693 1.3822 27 1 2.5146 -9.5470 -0.6505 28 1 3.3331 -8.0253 -1.0770 29 1 0.3139 -8.4720 -1.0399 30 1 1.3327 -8.3882 -2.4968 31 1 0.2327 -6.2103 -2.0527 32 1 2.0010 -6.0767 -1.8962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:43 Heat of formation + Delta-G solvation = 58.015545 kcal Electronic energy + Delta-G solvation = -14898.851984 eV Core-core repulsion = 12474.025707 eV Total energy + Delta-G solvation = -2424.826277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15314 -37.87382 -34.07948 -31.64285 -31.12756 -30.38427 -27.38090 -25.58883 -22.37006 -22.21839 -21.22064 -19.84411 -18.78147 -17.52873 -15.52132 -15.15486 -14.39127 -13.99269 -13.88665 -13.71688 -13.37584 -12.93093 -12.17782 -12.09358 -11.84873 -11.81566 -11.37176 -11.33244 -10.81300 -10.76946 -10.57894 -10.24000 -10.07258 -9.91152 -9.65590 -9.32548 -9.11020 -8.64125 -7.28708 -6.78100 -4.57854 2.84443 2.97282 3.04139 3.38702 3.71535 4.17511 4.69427 4.85129 5.02593 5.10818 5.13772 5.55830 5.64430 5.81277 5.85646 5.87610 5.94895 5.97233 6.27038 6.32359 6.35652 6.39773 6.49321 6.52849 6.57870 6.74014 6.85679 6.88168 7.06834 7.26584 7.86959 7.96391 8.56717 9.18581 10.19235 10.29240 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059743 B = 0.006417 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.561327 B = 4362.184485 C = 4547.189796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.316 4.316 8 H 0.120 0.880 9 N -0.150 5.150 10 C -0.114 4.114 11 C -0.065 4.065 12 C 0.015 3.985 13 C -0.108 4.108 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.106 4.106 18 N -0.332 5.332 19 N -0.095 5.095 20 H 0.281 0.719 21 H 0.152 0.848 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -8.983 -0.585 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.453 4.453 8 H 0.137 0.863 9 N 0.078 4.922 10 C -0.267 4.267 11 C -0.213 4.213 12 C -0.006 4.006 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.145 4.145 18 N -0.191 5.191 19 N -0.072 5.072 20 H 0.092 0.908 21 H 0.169 0.831 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.700 -8.131 -0.576 9.410 hybrid contribution 1.542 0.457 -0.018 1.609 sum 6.242 -7.674 -0.595 9.910 Atomic orbital electron populations 1.70162 1.06404 1.28839 1.33445 1.25773 0.95773 1.00775 0.94931 0.85656 0.79685 0.79516 0.78723 1.18425 1.19617 1.19614 1.20160 0.92156 0.80667 1.52278 0.86281 1.46700 1.06914 1.04520 1.34053 1.22270 0.98910 0.85122 1.20439 1.20692 0.89328 0.95178 1.16062 1.19109 0.97632 0.89173 0.94692 1.21548 0.98459 0.94375 1.00212 1.21548 1.01177 0.96494 0.96347 1.21531 0.98531 0.99578 0.95902 1.21553 0.98086 0.96711 0.99234 1.21553 1.01849 0.93977 0.97099 1.74005 1.25514 1.00843 1.18715 1.82526 0.88821 1.06900 1.28931 0.90833 0.83068 0.91297 0.92023 0.92116 0.92235 0.92535 0.92756 0.92187 0.92241 0.92608 0.92155 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.04 11.89 55.50 0.66 -20.38 16 2 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.94 18.43 29.55 -169.99 -5.02 13.40 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.32 -8.32 10.31 -14.69 -0.15 -8.48 16 8 H 0.12 2.79 7.83 -52.49 -0.41 2.38 16 9 N -0.15 -4.20 3.78 -11.47 -0.04 -4.24 16 10 C -0.11 -2.75 10.70 -16.57 -0.18 -2.93 16 11 C -0.07 -1.55 6.04 -83.05 -0.50 -2.06 16 12 C 0.01 0.27 2.64 -91.77 -0.24 0.03 16 13 C -0.11 -1.66 4.78 -26.73 -0.13 -1.79 16 14 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 16 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 17 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 18 N -0.33 -9.28 12.33 33.17 0.41 -8.87 16 19 N -0.10 -2.88 11.73 60.35 0.71 -2.17 16 20 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 21 H 0.15 3.12 7.34 -52.49 -0.39 2.73 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.06 0.93 7.24 -51.93 -0.38 0.56 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -31.12 265.65 -5.73 -36.85 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.53 Total: 2.25 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.91 Total: -20.84 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 1.73 Total: -35.67 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.12 -5.73 -36.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.865 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds