Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31254 * 1 3 3 Si 1.86803 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00134 * 3 2 1 7 7 C 1.39014 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99778 * 179.97438 * 7 2 1 9 9 N 1.37571 * 119.99843 * 0.27738 * 7 2 1 10 10 C 1.36661 * 126.88369 * 179.43498 * 9 7 2 11 11 C 1.34952 * 106.72361 * 179.84614 * 10 9 7 12 12 C 1.50707 * 125.48330 * 180.15993 * 11 10 9 13 13 C 1.52999 * 109.47468 * 35.33585 * 12 11 10 14 14 C 1.52995 * 109.47310 * 179.97438 * 13 12 11 15 15 C 1.53008 * 109.46986 * 59.99863 * 14 13 12 16 16 C 1.52999 * 109.47208 * 300.00200 * 15 14 13 17 17 C 1.52995 * 109.47097 * 59.99672 * 16 15 14 18 18 N 1.33454 * 109.02754 * 0.42499 * 11 10 9 19 19 N 1.28754 * 109.98572 * 359.73033 * 18 11 10 20 20 H 0.97005 * 119.99937 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.63964 * 359.97438 * 10 9 7 22 22 H 1.08996 * 109.46807 * 155.33653 * 12 11 10 23 23 H 1.09000 * 109.46942 * 300.00303 * 13 12 11 24 24 H 1.08996 * 109.47011 * 59.99882 * 13 12 11 25 25 H 1.09000 * 109.47447 * 300.00093 * 14 13 12 26 26 H 1.09003 * 109.47344 * 179.97438 * 14 13 12 27 27 H 1.08999 * 109.47098 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.46839 * 59.99858 * 15 14 13 29 29 H 1.09000 * 109.46787 * 300.00367 * 16 15 14 30 30 H 1.08996 * 109.47011 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47131 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47214 * 60.00639 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.7065 1.3464 0.0006 5 1 1.8878 2.3964 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0076 -1.2039 -0.0005 8 1 3.0876 -1.2038 -0.0010 9 7 1.3198 -2.3953 -0.0068 10 6 1.8563 -3.6521 -0.0190 11 6 0.8201 -4.5167 -0.0177 12 6 0.9346 -6.0194 -0.0252 13 6 2.1508 -6.4424 0.8010 14 6 2.2667 -7.9679 0.7939 15 6 2.4316 -8.4602 -0.6454 16 6 1.2153 -8.0372 -1.4716 17 6 1.0995 -6.5116 -1.4644 18 7 -0.3223 -3.8267 -0.0147 19 7 -0.0734 -2.5635 -0.0082 20 1 -0.4850 0.8401 0.0004 21 1 2.9063 -3.9046 -0.0259 22 1 0.0331 -6.4545 0.4061 23 1 3.0523 -6.0071 0.3696 24 1 2.0331 -6.0921 1.8264 25 1 1.3652 -8.4028 1.2255 26 1 3.1334 -8.2693 1.3822 27 1 2.5146 -9.5470 -0.6505 28 1 3.3331 -8.0253 -1.0770 29 1 0.3139 -8.4720 -1.0399 30 1 1.3327 -8.3882 -2.4968 31 1 0.2327 -6.2103 -2.0527 32 1 2.0010 -6.0767 -1.8962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = 38.590041 kcal Electronic energy + Delta-G solvation = -14899.694337 eV Core-core repulsion = 12474.025707 eV Total energy + Delta-G solvation = -2425.668630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.10987 -39.13681 -36.02245 -33.39034 -32.85135 -31.53475 -29.11950 -27.54798 -23.80700 -23.56191 -23.01192 -21.44110 -20.21100 -19.40545 -17.49232 -16.47781 -15.95893 -15.78252 -15.28360 -14.93734 -14.84625 -14.55726 -13.73350 -13.62413 -13.34457 -13.07434 -12.97792 -12.93706 -12.10667 -12.00173 -11.93276 -11.78176 -11.70395 -11.29985 -11.09197 -10.90502 -10.85430 -10.64519 -9.25637 -8.69976 -6.63484 1.10258 1.36720 1.58280 1.63318 2.05948 2.22421 2.79053 2.91876 3.81201 3.95850 4.03384 4.33099 4.46515 4.49871 4.56012 4.64422 4.72914 4.76029 4.82022 4.90660 4.96344 5.14721 5.18009 5.24733 5.35590 5.40154 5.42056 5.47876 5.60011 5.71483 5.96870 6.02475 6.60998 7.19906 8.24128 8.31951 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059743 B = 0.006417 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.561327 B = 4362.184485 C = 4547.189796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C -0.003 4.003 3 Si 1.029 2.971 4 H -0.238 1.238 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.344 4.344 8 H 0.146 0.854 9 N -0.165 5.165 10 C -0.122 4.122 11 C -0.057 4.057 12 C 0.014 3.986 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.112 4.112 17 C -0.102 4.102 18 N -0.370 5.370 19 N -0.157 5.157 20 H 0.287 0.713 21 H 0.188 0.812 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -9.830 -0.652 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.217 4.217 3 Si 0.846 3.154 4 H -0.160 1.160 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.164 0.836 9 N 0.062 4.938 10 C -0.275 4.275 11 C -0.206 4.206 12 C -0.007 4.007 13 C -0.141 4.141 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.140 4.140 18 N -0.227 5.227 19 N -0.133 5.133 20 H 0.097 0.903 21 H 0.204 0.796 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.312 -9.023 -0.643 11.631 hybrid contribution 0.729 0.666 0.000 0.987 sum 8.040 -8.356 -0.643 11.614 Atomic orbital electron populations 1.70323 1.08864 1.30409 1.34398 1.27138 0.96515 1.04924 0.93166 0.84403 0.79042 0.73264 0.78676 1.16021 1.19223 1.19202 1.21028 0.93604 0.80895 1.52503 0.83645 1.47070 1.06723 1.06078 1.33904 1.22954 1.00644 0.84126 1.19741 1.21641 0.88114 0.97816 1.13008 1.19313 0.98983 0.85541 0.96855 1.21508 0.96799 0.97035 0.98740 1.21529 1.02331 0.93665 0.97525 1.21534 0.97752 1.01169 0.94741 1.21523 0.99170 0.93485 1.00813 1.21488 1.00656 0.96926 0.94960 1.73964 1.27409 1.00920 1.20442 1.82469 0.90463 1.07951 1.32372 0.90307 0.79551 0.92161 0.91497 0.93266 0.92019 0.90357 0.90219 0.91704 0.91982 0.90902 0.94570 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.20 11.89 21.66 0.26 -45.94 16 2 C 0.00 -0.15 5.50 84.97 0.47 0.31 16 3 Si 1.03 36.96 29.55 68.60 2.03 38.99 16 4 H -0.24 -7.60 7.11 99.48 0.71 -6.89 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.34 -18.14 10.31 83.98 0.87 -17.28 16 8 H 0.15 6.59 7.83 -2.91 -0.02 6.57 16 9 N -0.17 -9.44 3.78 -190.21 -0.72 -10.16 16 10 C -0.12 -5.91 10.70 83.18 0.89 -5.02 16 11 C -0.06 -2.78 6.04 41.56 0.25 -2.53 16 12 C 0.01 0.50 2.64 -11.54 -0.03 0.47 16 13 C -0.10 -2.97 4.78 30.59 0.15 -2.83 16 14 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 15 C -0.11 -2.22 5.92 30.60 0.18 -2.04 16 16 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 17 C -0.10 -3.24 5.19 30.59 0.16 -3.08 16 18 N -0.37 -21.62 12.33 -48.98 -0.60 -22.23 16 19 N -0.16 -9.91 11.73 37.02 0.43 -9.48 16 20 H 0.29 14.70 8.31 -92.70 -0.77 13.93 16 21 H 0.19 7.41 7.34 -2.91 -0.02 7.38 16 22 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.07 1.86 7.24 -2.39 -0.02 1.84 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.97 265.65 5.78 -65.19 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.09 Total: 20.28 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.29 Total: -36.66 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -0.63 Total: -87.80 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -70.97 5.78 -65.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.779 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds