Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00180 * 2 1 4 4 H 1.48500 * 109.47308 * 270.00511 * 3 2 1 5 5 H 1.48500 * 109.46939 * 30.00246 * 3 2 1 6 6 H 1.48492 * 109.47289 * 149.99965 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99833 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99899 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47350 * 59.99760 * 9 7 2 11 11 N 1.46897 * 109.46925 * 299.99197 * 9 7 2 12 12 C 1.50709 * 109.46907 * 179.97438 * 9 7 2 13 13 C 1.35311 * 126.12521 * 84.97092 * 12 9 7 14 14 C 1.39876 * 107.91749 * 180.02562 * 13 12 9 15 15 N 1.30834 * 108.20073 * 0.27043 * 14 13 12 16 16 N 1.34947 * 126.12449 * 265.01844 * 12 9 7 17 17 C 1.46500 * 126.04040 * 359.96194 * 16 12 9 18 18 C 1.52992 * 109.47291 * 90.00121 * 17 16 12 19 19 C 1.53002 * 117.50045 * 243.62435 * 18 17 16 20 20 C 1.52996 * 117.50056 * 175.00092 * 18 17 16 21 21 H 0.97002 * 119.99668 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99645 * 176.04586 * 11 9 7 23 23 H 1.00900 * 111.00411 * 300.00342 * 11 9 7 24 24 H 1.08001 * 126.04065 * 0.06320 * 13 12 9 25 25 H 1.08002 * 125.89548 * 179.97438 * 14 13 12 26 26 H 1.08996 * 109.47009 * 210.00717 * 17 16 12 27 27 H 1.09011 * 109.46832 * 330.00309 * 17 16 12 28 28 H 1.09003 * 115.54771 * 29.33415 * 18 17 16 29 29 H 1.08997 * 117.49872 * 359.97438 * 19 18 17 30 30 H 1.09004 * 117.49641 * 145.02198 * 19 18 17 31 31 H 1.09002 * 117.50298 * 214.97878 * 20 18 17 32 32 H 1.08998 * 117.50298 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8753 -0.6803 0.8888 11 7 4.0007 -0.5014 -1.2007 12 6 4.0139 -2.6149 -0.0010 13 6 4.1891 -3.3992 -1.0896 14 6 4.6677 -4.6393 -0.6541 15 7 4.7705 -4.6027 0.6497 16 7 4.3688 -3.3332 1.0849 17 6 4.3347 -2.8692 2.4741 18 6 2.9679 -3.1859 3.0842 19 6 2.0962 -2.0050 3.5162 20 6 2.7708 -2.8842 4.5711 21 1 -0.4850 0.8401 0.0004 22 1 5.0073 -0.4313 -1.1925 23 1 3.6768 -0.9588 -2.0397 24 1 3.9944 -3.1173 -2.1139 25 1 4.9063 -5.4829 -1.2848 26 1 5.1134 -3.3746 3.0452 27 1 4.5043 -1.7927 2.5019 28 1 2.4631 -4.0622 2.6773 29 1 2.4968 -1.0024 3.3661 30 1 1.0177 -2.1041 3.3934 31 1 2.1361 -3.5615 5.1424 32 1 3.6151 -2.4604 5.1149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = 79.753104 kcal Electronic energy + Delta-G solvation = -15321.208845 eV Core-core repulsion = 12897.325179 eV Total energy + Delta-G solvation = -2423.883666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.10715 -38.39947 -36.71487 -33.95320 -33.56879 -30.35062 -28.37329 -27.76885 -24.18646 -23.22966 -22.40872 -21.44728 -20.32726 -19.01429 -17.97528 -16.72904 -16.34352 -16.06983 -15.86821 -15.40961 -14.89925 -14.62283 -14.45560 -14.08674 -13.55739 -13.23933 -12.71267 -12.68029 -12.51908 -12.36763 -11.78796 -11.67596 -11.48612 -11.37875 -10.92083 -10.72835 -10.07652 -9.58707 -9.28672 -8.21660 -6.34888 1.04490 1.52624 1.59390 1.69050 1.71870 2.01710 2.52759 2.89322 3.12894 3.60224 3.79665 3.96133 4.02399 4.09578 4.13124 4.23027 4.44446 4.56919 4.62372 4.78521 4.92675 4.93579 5.07085 5.19735 5.25446 5.32751 5.53389 5.87181 6.09444 6.23355 6.37686 6.75013 6.87215 6.94455 7.39845 8.91463 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.013243 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.124017 B = 2113.862865 C = 2917.774154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.038 3.962 3 Si 0.992 3.008 4 H -0.277 1.277 5 H -0.325 1.325 6 H -0.257 1.257 7 C -0.495 4.495 8 H 0.022 0.978 9 C 0.254 3.746 10 H 0.047 0.953 11 N -0.833 5.833 12 C 0.087 3.913 13 C -0.302 4.302 14 C 0.044 3.956 15 N -0.337 5.337 16 N -0.372 5.372 17 C 0.166 3.834 18 C -0.178 4.178 19 C -0.171 4.171 20 C -0.140 4.140 21 H 0.264 0.736 22 H 0.335 0.665 23 H 0.346 0.654 24 H 0.148 0.852 25 H 0.211 0.789 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -3.567 4.363 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.162 4.162 3 Si 0.822 3.178 4 H -0.203 1.203 5 H -0.255 1.255 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.142 3.858 10 H 0.065 0.935 11 N -0.364 5.364 12 C -0.043 4.043 13 C -0.331 4.331 14 C -0.141 4.141 15 N -0.158 5.158 16 N -0.154 5.154 17 C 0.045 3.955 18 C -0.198 4.198 19 C -0.209 4.209 20 C -0.177 4.177 21 H 0.073 0.927 22 H 0.148 0.852 23 H 0.160 0.840 24 H 0.166 0.834 25 H 0.227 0.773 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.238 -3.467 5.815 12.274 hybrid contribution -0.250 0.113 -1.286 1.315 sum 9.989 -3.354 4.529 11.469 Atomic orbital electron populations 1.70072 1.08479 1.28082 1.51541 1.25680 0.95007 1.02967 0.92520 0.84983 0.77616 0.76988 0.78241 1.20323 1.25494 1.18186 1.20544 0.88801 0.92350 1.51743 0.95956 1.17983 0.93796 0.82530 0.91475 0.93527 1.59175 1.14941 1.56828 1.05437 1.22714 0.95818 0.98007 0.87783 1.21317 1.16720 0.95522 0.99576 1.24239 0.98889 0.98865 0.92146 1.77130 1.25055 0.99764 1.13868 1.48689 1.50752 1.09273 1.06659 1.21332 0.96951 1.00274 0.76974 1.22397 0.97408 1.00457 0.99505 1.22838 0.98420 0.95518 1.04082 1.23118 1.03317 1.01965 0.89311 0.92684 0.85225 0.83993 0.83389 0.77254 0.87015 0.88626 0.90464 0.89069 0.90920 0.87450 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 2 C 0.04 2.12 5.47 84.66 0.46 2.58 16 3 Si 0.99 46.55 26.03 68.60 1.79 48.33 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.26 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.50 -26.75 9.29 25.60 0.24 -26.51 16 8 H 0.02 1.40 7.98 -2.91 -0.02 1.38 16 9 C 0.25 11.04 2.37 43.43 0.10 11.14 16 10 H 0.05 2.05 6.00 -2.39 -0.01 2.03 16 11 N -0.83 -31.88 6.62 -174.94 -1.16 -33.04 16 12 C 0.09 3.54 5.91 41.41 0.24 3.78 16 13 C -0.30 -11.18 10.13 21.99 0.22 -10.95 16 14 C 0.04 1.47 12.03 85.24 1.03 2.50 16 15 N -0.34 -12.61 12.58 -57.02 -0.72 -13.33 16 16 N -0.37 -14.17 3.61 -334.70 -1.21 -15.38 16 17 C 0.17 5.29 6.52 86.38 0.56 5.85 16 18 C -0.18 -5.92 6.01 -10.80 -0.06 -5.99 16 19 C -0.17 -5.90 10.18 30.59 0.31 -5.59 16 20 C -0.14 -3.50 10.25 30.59 0.31 -3.18 16 21 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 22 H 0.33 10.70 9.06 -89.69 -0.81 9.88 16 23 H 0.35 12.86 8.05 -89.69 -0.72 12.14 16 24 H 0.15 5.00 7.48 -2.91 -0.02 4.98 16 25 H 0.21 5.13 8.06 -2.91 -0.02 5.10 16 26 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.10 2.93 6.71 -2.38 -0.02 2.91 16 28 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.09 3.22 8.03 -2.39 -0.02 3.20 16 30 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -66.74 272.09 1.97 -64.78 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.46 Total: 31.92 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.42 Total: -26.36 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -2.78 Total: -118.67 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.79 Total: 48.33 kcal Total: -66.74 1.97 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.532 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds