Wall clock time and date at job start Mon Mar 30 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.36808 * 60.89548 * 9 7 2 11 11 C 1.54382 * 110.41327 * 298.54933 * 9 7 2 12 12 C 1.54266 * 105.06212 * 217.37099 * 11 9 7 13 13 C 1.54381 * 105.05708 * 359.97438 * 12 11 9 14 14 N 1.48561 * 110.41049 * 183.37374 * 9 7 2 15 15 C 1.46901 * 111.00120 * 277.81955 * 14 9 7 16 16 C 1.50697 * 109.46985 * 170.00103 * 15 14 9 17 17 C 1.39873 * 126.03810 * 269.69101 * 16 15 14 18 18 N 1.30841 * 108.19734 * 179.82256 * 17 16 15 19 19 N 1.40079 * 108.20868 * 0.43516 * 18 17 16 20 20 H 0.97002 * 126.03868 * 179.70000 * 19 18 17 21 21 C 1.34951 * 107.92350 * 359.72199 * 19 18 17 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.32347 * 336.26241 * 11 9 7 24 24 H 1.08997 * 110.33077 * 98.37120 * 11 9 7 25 25 H 1.08998 * 110.32425 * 118.89058 * 12 11 9 26 26 H 1.08996 * 110.32294 * 241.00543 * 12 11 9 27 27 H 1.09005 * 110.41042 * 142.63457 * 13 12 11 28 28 H 1.09001 * 110.41305 * 265.07187 * 13 12 11 29 29 H 1.09008 * 109.46712 * 290.00135 * 15 14 9 30 30 H 1.08996 * 109.46607 * 49.99926 * 15 14 9 31 31 H 1.07992 * 125.89767 * 359.97438 * 17 16 15 32 32 H 1.08001 * 126.12165 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6306 -2.5790 -0.8931 11 6 0.3835 -2.6200 1.2707 12 6 0.4621 -4.1081 1.6698 13 6 1.3701 -4.7612 0.6057 14 7 2.1957 -3.6428 0.0808 15 6 2.7429 -3.9689 -1.2430 16 6 3.8695 -4.9582 -1.0910 17 6 5.2220 -4.6452 -0.9198 18 7 5.8913 -5.7652 -0.8217 19 7 4.9859 -6.8278 -0.9376 20 1 5.2067 -7.7718 -0.9056 21 6 3.7522 -6.3062 -1.1020 22 1 -0.4850 0.8401 0.0004 23 1 0.7873 -1.9930 2.0657 24 1 -0.6470 -2.3386 1.0541 25 1 0.9046 -4.2114 2.6605 26 1 -0.5303 -4.5582 1.6502 27 1 2.0053 -5.5204 1.0621 28 1 0.7683 -5.1971 -0.1918 29 1 1.9588 -4.4034 -1.8632 30 1 3.1179 -3.0607 -1.7147 31 1 5.6409 -3.6510 -0.8738 32 1 2.8354 -6.8646 -1.2207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260216481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:38 Heat of formation + Delta-G solvation = 77.939480 kcal Electronic energy + Delta-G solvation = -15015.311722 eV Core-core repulsion = 12591.349411 eV Total energy + Delta-G solvation = -2423.962311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84073 -37.72623 -32.85580 -32.13262 -30.96882 -29.07560 -27.96953 -24.71073 -23.89369 -21.62532 -20.15052 -19.53712 -19.46696 -17.30246 -16.31226 -14.99939 -14.60095 -14.28576 -14.15339 -13.79807 -13.27334 -13.05308 -12.47573 -12.08005 -11.69337 -11.24550 -11.08761 -10.84948 -10.61861 -10.46290 -10.21533 -10.01920 -9.67435 -9.52737 -9.34514 -8.90365 -8.37772 -8.18575 -7.27956 -5.97567 -3.98159 2.15432 3.12012 3.16670 3.37156 3.41106 3.44705 4.47050 5.09910 5.15534 5.31348 5.36779 5.63077 5.76770 5.85865 5.89960 6.07643 6.22768 6.34650 6.43786 6.61029 6.65018 6.72945 6.96329 7.11615 7.20518 7.43142 7.49198 7.64567 7.89560 7.93140 8.12536 8.29633 8.57730 9.07234 9.65533 11.12394 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.008456 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.670044 B = 3310.333177 C = 3990.828469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.201 3.799 10 H 0.008 0.992 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.036 3.964 14 N -0.501 5.501 15 C 0.123 3.877 16 C -0.204 4.204 17 C 0.070 3.930 18 N -0.309 5.309 19 N -0.487 5.487 20 H 0.433 0.567 21 C 0.048 3.952 22 H 0.260 0.740 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -11.040 -1.656 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.095 3.905 10 H 0.026 0.974 11 C -0.133 4.133 12 C -0.169 4.169 13 C -0.092 4.092 14 N -0.226 5.226 15 C -0.006 4.006 16 C -0.215 4.215 17 C -0.117 4.117 18 N -0.132 5.132 19 N -0.195 5.195 20 H 0.276 0.724 21 C -0.099 4.099 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.200 0.800 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.077 -11.281 -1.167 12.425 hybrid contribution -1.079 0.558 -0.563 1.339 sum 3.997 -10.723 -1.730 11.573 Atomic orbital electron populations 1.69966 1.05887 1.26605 1.50971 1.24943 0.94851 0.99049 0.95408 0.86609 0.79472 0.82962 0.78641 1.21514 1.20262 1.20322 1.20991 0.93344 0.89320 1.49909 0.91884 1.20195 0.88806 0.88301 0.93190 0.97430 1.22195 1.00244 0.91470 0.99415 1.22399 0.97482 0.98872 0.98145 1.22985 0.94519 0.94895 0.96814 1.65438 1.31831 1.04044 1.21274 1.20394 0.92575 0.96219 0.91424 1.20259 0.95701 0.93055 1.12529 1.23840 0.92532 0.97398 0.97887 1.77252 1.16199 0.94358 1.25343 1.46190 1.05050 1.08610 1.59666 0.72427 1.22312 0.89665 0.95061 1.02903 0.93052 0.92363 0.92348 0.92734 0.93321 0.92344 0.95643 0.95436 0.89561 0.80021 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 12.35 55.43 0.68 -24.78 16 2 C 0.06 1.62 5.33 -17.82 -0.09 1.52 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -13.53 8.34 -34.44 -0.29 -13.82 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.00 2.21 -67.22 -0.15 4.85 16 10 H 0.01 0.22 8.00 -51.93 -0.42 -0.20 16 11 C -0.09 -2.23 5.57 -25.34 -0.14 -2.37 16 12 C -0.13 -2.52 7.00 -25.34 -0.18 -2.70 16 13 C 0.04 0.68 5.93 -2.16 -0.01 0.66 16 14 N -0.50 -10.68 5.00 -224.90 -1.12 -11.81 16 15 C 0.12 2.31 5.26 -4.98 -0.03 2.29 16 16 C -0.20 -3.33 5.33 -105.05 -0.56 -3.89 16 17 C 0.07 1.15 11.96 -17.36 -0.21 0.94 16 18 N -0.31 -4.90 12.70 30.62 0.39 -4.51 16 19 N -0.49 -6.21 7.36 30.45 0.22 -5.99 16 20 H 0.43 3.86 8.96 -182.61 -1.64 2.23 16 21 C 0.05 0.64 11.63 -17.22 -0.20 0.44 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.06 1.48 7.85 -51.93 -0.41 1.07 16 24 H 0.06 1.45 7.94 -51.93 -0.41 1.03 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.03 0.44 7.75 -51.93 -0.40 0.04 16 29 H 0.03 0.49 7.77 -51.92 -0.40 0.09 16 30 H 0.09 1.73 7.78 -51.93 -0.40 1.33 16 31 H 0.18 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 269.50 15.07 4.06 4.06 Total: -1.00 -30.28 269.50 -8.38 -38.66 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.74 Total: 0.13 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.86 Total: -12.08 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.17 Total: -47.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.28 -8.38 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.598 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds