Wall clock time and date at job start Mon Mar 30 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.36808 * 60.89548 * 9 7 2 11 11 C 1.54382 * 110.41327 * 298.54933 * 9 7 2 12 12 C 1.54266 * 105.06212 * 217.37099 * 11 9 7 13 13 C 1.54381 * 105.05708 * 359.97438 * 12 11 9 14 14 N 1.48561 * 110.41049 * 183.37374 * 9 7 2 15 15 C 1.46901 * 111.00120 * 277.81955 * 14 9 7 16 16 C 1.50697 * 109.46985 * 170.00103 * 15 14 9 17 17 C 1.39873 * 126.03810 * 269.69101 * 16 15 14 18 18 N 1.30841 * 108.19734 * 179.82256 * 17 16 15 19 19 N 1.40079 * 108.20868 * 0.43516 * 18 17 16 20 20 H 0.97002 * 126.03868 * 179.70000 * 19 18 17 21 21 C 1.34951 * 107.92350 * 359.72199 * 19 18 17 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.32347 * 336.26241 * 11 9 7 24 24 H 1.08997 * 110.33077 * 98.37120 * 11 9 7 25 25 H 1.08998 * 110.32425 * 118.89058 * 12 11 9 26 26 H 1.08996 * 110.32294 * 241.00543 * 12 11 9 27 27 H 1.09005 * 110.41042 * 142.63457 * 13 12 11 28 28 H 1.09001 * 110.41305 * 265.07187 * 13 12 11 29 29 H 1.09008 * 109.46712 * 290.00135 * 15 14 9 30 30 H 1.08996 * 109.46607 * 49.99926 * 15 14 9 31 31 H 1.07992 * 125.89767 * 359.97438 * 17 16 15 32 32 H 1.08001 * 126.12165 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6306 -2.5790 -0.8931 11 6 0.3835 -2.6200 1.2707 12 6 0.4621 -4.1081 1.6698 13 6 1.3701 -4.7612 0.6057 14 7 2.1957 -3.6428 0.0808 15 6 2.7429 -3.9689 -1.2430 16 6 3.8695 -4.9582 -1.0910 17 6 5.2220 -4.6452 -0.9198 18 7 5.8913 -5.7652 -0.8217 19 7 4.9859 -6.8278 -0.9376 20 1 5.2067 -7.7718 -0.9056 21 6 3.7522 -6.3062 -1.1020 22 1 -0.4850 0.8401 0.0004 23 1 0.7873 -1.9930 2.0657 24 1 -0.6470 -2.3386 1.0541 25 1 0.9046 -4.2114 2.6605 26 1 -0.5303 -4.5582 1.6502 27 1 2.0053 -5.5204 1.0621 28 1 0.7683 -5.1971 -0.1918 29 1 1.9588 -4.4034 -1.8632 30 1 3.1179 -3.0607 -1.7147 31 1 5.6409 -3.6510 -0.8738 32 1 2.8354 -6.8646 -1.2207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:38 Heat of formation + Delta-G solvation = 56.875534 kcal Electronic energy + Delta-G solvation = -15016.225123 eV Core-core repulsion = 12591.349411 eV Total energy + Delta-G solvation = -2424.875712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00373 -39.40428 -34.76690 -33.72523 -32.15623 -30.55568 -29.76651 -26.42317 -25.59835 -22.80666 -21.63685 -21.34869 -20.79527 -18.49548 -18.30680 -16.76697 -16.37111 -15.81917 -15.33740 -15.19100 -14.85741 -14.52965 -14.09535 -13.67655 -13.29819 -12.94751 -12.85655 -12.52982 -12.47995 -12.24201 -11.75779 -11.52419 -11.45071 -11.35017 -10.84062 -10.48223 -10.46592 -9.41897 -8.94083 -8.08407 -6.15536 1.04018 1.44996 1.46572 1.54010 1.88586 2.16334 2.47008 3.22382 3.67077 3.98050 4.11208 4.16722 4.25188 4.40548 4.52904 4.72208 4.77038 4.93506 4.98255 5.00298 5.12411 5.26189 5.30938 5.40954 5.59747 5.71688 5.73685 5.79737 6.23085 6.53868 6.55633 6.66343 6.81000 6.96429 7.51900 9.00453 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.008456 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.670044 B = 3310.333177 C = 3990.828469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.202 3.798 10 H -0.023 1.023 11 C -0.090 4.090 12 C -0.123 4.123 13 C 0.040 3.960 14 N -0.514 5.514 15 C 0.132 3.868 16 C -0.234 4.234 17 C 0.055 3.945 18 N -0.329 5.329 19 N -0.468 5.468 20 H 0.452 0.548 21 C 0.076 3.924 22 H 0.260 0.740 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.181 0.819 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 -12.961 -1.510 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.095 3.905 10 H -0.005 1.005 11 C -0.129 4.129 12 C -0.161 4.161 13 C -0.088 4.088 14 N -0.238 5.238 15 C 0.002 3.998 16 C -0.246 4.246 17 C -0.131 4.131 18 N -0.152 5.152 19 N -0.178 5.178 20 H 0.299 0.701 21 C -0.073 4.073 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.198 0.802 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.534 -13.239 -1.022 14.385 hybrid contribution -1.204 1.071 -0.631 1.731 sum 4.330 -12.168 -1.653 13.020 Atomic orbital electron populations 1.70080 1.07100 1.27253 1.51810 1.25675 0.95647 1.02193 0.95154 0.85659 0.78337 0.79149 0.78767 1.21050 1.19972 1.19612 1.21278 0.93120 0.90966 1.49674 0.92806 1.19986 0.89088 0.89158 0.92286 1.00520 1.21991 0.98383 0.94484 0.98048 1.22365 0.99375 0.95415 0.98927 1.23041 0.94551 0.94252 0.96908 1.65379 1.31308 1.04177 1.22973 1.20216 0.93440 0.95959 0.90147 1.20060 0.94767 0.93970 1.15812 1.23926 0.92926 0.97809 0.98411 1.77211 1.17102 0.94782 1.26154 1.46217 1.04513 1.09207 1.57913 0.70133 1.22721 0.90803 0.94082 0.99727 0.93104 0.95128 0.94415 0.91663 0.90840 0.90062 0.94004 0.94632 0.92228 0.80237 0.77763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.79 12.35 21.45 0.26 -53.52 16 2 C 0.01 0.67 5.33 84.66 0.45 1.12 16 3 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.51 -28.64 8.34 25.60 0.21 -28.43 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.20 10.24 2.21 44.32 0.10 10.34 16 10 H -0.02 -1.27 8.00 -2.39 -0.02 -1.29 16 11 C -0.09 -4.32 5.57 31.49 0.18 -4.14 16 12 C -0.12 -4.49 7.00 31.49 0.22 -4.27 16 13 C 0.04 1.39 5.93 86.45 0.51 1.90 16 14 N -0.51 -21.61 5.00 -865.46 -4.32 -25.93 16 15 C 0.13 4.88 5.26 85.56 0.45 5.33 16 16 C -0.23 -7.27 5.33 -20.14 -0.11 -7.38 16 17 C 0.06 1.77 11.96 85.24 1.02 2.79 16 18 N -0.33 -9.83 12.70 -57.02 -0.72 -10.55 16 19 N -0.47 -10.35 7.36 -57.59 -0.42 -10.77 16 20 H 0.45 6.27 8.96 -213.33 -1.91 4.36 16 21 C 0.08 1.75 11.63 83.54 0.97 2.72 16 22 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 23 H 0.03 1.58 7.85 -2.39 -0.02 1.56 16 24 H 0.04 1.91 7.94 -2.39 -0.02 1.89 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 2.45 8.10 -2.38 -0.02 2.44 16 28 H 0.04 1.31 7.75 -2.39 -0.02 1.29 16 29 H 0.04 1.24 7.77 -2.38 -0.02 1.22 16 30 H 0.06 2.47 7.78 -2.39 -0.02 2.45 16 31 H 0.18 5.54 8.06 -2.91 -0.02 5.51 16 32 H 0.21 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -66.18 269.50 0.02 -66.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.80 Total: 8.18 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.01 Total: -20.02 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -5.21 Total: -100.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.18 0.02 -66.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.030 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds