Wall clock time and date at job start Mon Mar 30 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99967 * 2 1 4 4 H 1.48508 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47091 * 299.99710 * 3 2 1 6 6 H 1.48495 * 109.47375 * 59.99955 * 3 2 1 7 7 C 1.37885 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47080 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47245 * 305.00230 * 10 9 7 12 12 N 1.46904 * 109.47187 * 65.00306 * 10 9 7 13 13 C 1.50703 * 109.46849 * 184.99746 * 10 9 7 14 14 C 1.39868 * 126.04299 * 279.99609 * 13 10 9 15 15 N 1.30837 * 108.20148 * 180.02562 * 14 13 10 16 16 N 1.40081 * 108.20828 * 0.02562 * 15 14 13 17 17 C 1.46494 * 126.04084 * 180.26238 * 16 15 14 18 18 C 1.52999 * 117.50213 * 163.31633 * 17 16 15 19 19 C 1.52995 * 117.50105 * 94.68997 * 17 16 15 20 20 C 1.34954 * 107.92384 * 0.02562 * 16 15 14 21 21 H 0.96994 * 119.99914 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47216 * 60.00070 * 9 7 2 23 23 H 1.09002 * 109.46996 * 300.00174 * 9 7 2 24 24 H 1.00899 * 110.99986 * 59.99870 * 12 10 9 25 25 H 1.00899 * 111.00013 * 183.95271 * 12 10 9 26 26 H 1.08001 * 125.89990 * 359.97438 * 14 13 10 27 27 H 1.09008 * 115.54721 * 309.02072 * 17 16 15 28 28 H 1.08998 * 117.50138 * 359.97438 * 18 17 16 29 29 H 1.09001 * 117.50101 * 145.01854 * 18 17 16 30 30 H 1.09001 * 117.50293 * 214.98057 * 19 17 16 31 31 H 1.09001 * 117.49933 * 359.97438 * 19 17 16 32 32 H 1.07999 * 126.12426 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 1 2.9294 -3.5560 -0.8391 12 7 3.0084 -3.6529 1.2580 13 6 1.4959 -4.9638 -0.1199 14 6 0.8430 -5.6384 0.9170 15 7 0.3105 -6.7273 0.4245 16 7 0.6085 -6.7804 -0.9432 17 6 0.1969 -7.8334 -1.8748 18 6 0.2796 -7.5250 -3.3710 19 6 -1.0833 -7.6032 -2.6803 20 6 1.3374 -5.6875 -1.2522 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.3961 -3.7500 2.0541 25 1 3.7161 -4.3720 1.2563 26 1 0.7887 -5.3165 1.9465 27 1 0.4156 -8.8532 -1.5579 28 1 0.6400 -6.5384 -3.6624 29 1 0.5530 -8.3418 -4.0390 30 1 -1.7067 -8.4715 -2.8938 31 1 -1.6196 -6.6684 -2.5168 32 1 1.7237 -5.4350 -2.2286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:01 Heat of formation + Delta-G solvation = 77.717341 kcal Electronic energy + Delta-G solvation = -14540.575738 eV Core-core repulsion = 12116.603795 eV Total energy + Delta-G solvation = -2423.971943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.25597 -38.29190 -36.80175 -34.43273 -31.85499 -30.65380 -30.01186 -26.06180 -24.30613 -23.60587 -22.82402 -21.12062 -20.62275 -18.53766 -17.92749 -16.74646 -16.73038 -16.24103 -15.60608 -15.10708 -15.02367 -14.60544 -14.20500 -13.76272 -13.57797 -13.10489 -12.80900 -12.52381 -12.44884 -12.29535 -11.95967 -11.82061 -11.45929 -11.40938 -11.10312 -10.48634 -10.29551 -9.47153 -9.13177 -8.07730 -6.13971 0.87307 1.44402 1.45489 1.49181 1.59275 1.81934 2.50610 2.59533 3.25425 3.52805 3.65840 3.87474 3.91594 4.01473 4.08409 4.49235 4.55402 4.63602 4.71571 4.85362 4.91690 5.06315 5.07807 5.16330 5.54376 5.64042 5.77908 5.92590 6.14448 6.36778 6.60119 6.71365 6.92721 7.01979 7.52870 9.04359 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.006213 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.952400 B = 4505.716052 C = 4810.884196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.009 4.009 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.047 3.953 10 C 0.187 3.813 11 H 0.070 0.930 12 N -0.827 5.827 13 C -0.271 4.271 14 C 0.042 3.958 15 N -0.322 5.322 16 N -0.350 5.350 17 C 0.055 3.945 18 C -0.147 4.147 19 C -0.179 4.179 20 C 0.056 3.944 21 H 0.258 0.742 22 H -0.014 1.014 23 H -0.014 1.014 24 H 0.336 0.664 25 H 0.339 0.661 26 H 0.186 0.814 27 H 0.151 0.849 28 H 0.100 0.900 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -16.176 -5.948 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.204 4.204 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.009 3.991 10 C 0.074 3.926 11 H 0.088 0.912 12 N -0.354 5.354 13 C -0.284 4.284 14 C -0.143 4.143 15 N -0.143 5.143 16 N -0.131 5.131 17 C -0.046 4.046 18 C -0.184 4.184 19 C -0.217 4.217 20 C -0.090 4.090 21 H 0.067 0.933 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.203 0.797 27 H 0.168 0.832 28 H 0.119 0.881 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.633 -16.479 -5.981 17.606 hybrid contribution -0.051 0.914 0.223 0.942 sum 1.582 -15.565 -5.757 16.671 Atomic orbital electron populations 1.70128 1.07757 1.27109 1.53534 1.25933 0.95622 1.03112 0.95769 0.85444 0.79221 0.79310 0.77295 1.18635 1.20802 1.20996 1.21594 0.93543 0.91460 1.47402 0.91924 1.18929 0.93323 0.92686 0.94154 1.19587 0.92632 0.87883 0.92528 0.91192 1.58785 1.18152 1.54951 1.03560 1.21449 1.10993 1.02244 0.93734 1.23858 0.97013 0.92647 1.00820 1.77189 1.24545 1.22325 0.90255 1.48163 1.40558 1.18263 1.06146 1.22118 1.04786 0.90610 0.87134 1.23564 0.98789 1.05588 0.90506 1.23505 0.91518 1.04561 1.02123 1.22603 0.97225 0.88377 1.00792 0.93326 0.99554 0.99597 0.85133 0.84893 0.79671 0.83167 0.88113 0.83414 0.84695 0.90452 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 3 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.50 -28.83 8.84 25.60 0.23 -28.60 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.05 2.48 4.60 29.85 0.14 2.62 16 10 C 0.19 7.66 3.14 44.17 0.14 7.80 16 11 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 12 N -0.83 -30.59 8.85 -171.80 -1.52 -32.11 16 13 C -0.27 -9.86 5.08 -20.14 -0.10 -9.96 16 14 C 0.04 1.49 11.40 85.24 0.97 2.46 16 15 N -0.32 -11.34 12.58 -57.02 -0.72 -12.06 16 16 N -0.35 -10.53 3.94 -327.50 -1.29 -11.82 16 17 C 0.06 1.14 7.14 44.99 0.32 1.46 16 18 C -0.15 -2.08 9.98 30.59 0.31 -1.78 16 19 C -0.18 -3.16 10.46 30.59 0.32 -2.84 16 20 C 0.06 1.78 10.73 83.54 0.90 2.68 16 21 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 22 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 23 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 24 H 0.34 12.04 8.19 -89.69 -0.73 11.30 16 25 H 0.34 10.43 9.06 -89.69 -0.81 9.62 16 26 H 0.19 5.94 7.66 -2.91 -0.02 5.91 16 27 H 0.15 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.10 1.59 7.01 -2.39 -0.02 1.57 16 29 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.19 4.88 7.24 -2.91 -0.02 4.86 16 Total: -1.00 -71.95 278.54 2.04 -69.91 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.42 Total: 23.18 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 3.68 Total: -26.21 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -3.24 Total: -114.67 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.95 2.04 -69.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.623 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds