Wall clock time and date at job start Mon Mar 30 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38120 * 120.40016 * 2 1 4 4 C 1.39621 * 118.33955 * 180.02562 * 3 2 1 5 5 N 1.38536 * 120.53533 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00038 * 354.19262 * 5 4 3 7 7 C 1.53004 * 109.47018 * 298.53341 * 6 5 4 8 8 C 1.52997 * 109.47187 * 178.53478 * 6 5 4 9 9 C 1.50700 * 109.47575 * 58.53070 * 6 5 4 10 10 H 1.07996 * 119.99707 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00374 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99526 * 0.02562 * 11 9 6 13 13 Si 1.86793 * 119.99908 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47340 * 60.00723 * 13 11 9 15 15 H 1.48507 * 109.46981 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47671 * 300.00198 * 13 11 9 17 17 N 1.33002 * 118.93202 * 0.24978 * 4 3 2 18 18 C 1.31749 * 120.68398 * 359.49012 * 17 4 3 19 19 N 1.31781 * 121.83601 * 0.52254 * 18 17 4 20 20 H 1.09004 * 109.46532 * 90.00342 * 1 2 3 21 21 H 1.09005 * 109.46950 * 209.99655 * 1 2 3 22 22 H 1.08995 * 109.47542 * 330.00364 * 1 2 3 23 23 H 1.08002 * 120.83098 * 0.03992 * 3 2 1 24 24 H 0.97006 * 120.00034 * 174.18836 * 5 4 3 25 25 H 1.09006 * 109.46893 * 303.57087 * 7 6 5 26 26 H 1.08995 * 109.47334 * 63.56957 * 7 6 5 27 27 H 1.08998 * 109.47035 * 183.57016 * 7 6 5 28 28 H 1.09006 * 109.47583 * 172.52128 * 8 6 5 29 29 H 1.09004 * 109.47155 * 292.51891 * 8 6 5 30 30 H 1.08997 * 109.47376 * 52.51723 * 8 6 5 31 31 H 0.96998 * 119.99235 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.08224 * 180.26780 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1411 -0.0005 5 7 4.3475 2.3082 -0.0011 6 6 3.6787 3.6053 -0.1295 7 6 2.9431 3.6693 -1.4696 8 6 4.7198 4.7245 -0.0652 9 6 2.6896 3.7740 0.9949 10 1 2.5714 2.9934 1.7317 11 6 1.9364 4.9255 1.0836 12 7 2.0808 5.8763 0.1865 13 14 0.7100 5.1342 2.4769 14 1 1.4233 5.0712 3.7779 15 1 0.0321 6.4491 2.3468 16 1 -0.3010 4.0483 2.4135 17 7 4.2024 -0.0453 -0.0061 18 6 3.4956 -1.1572 -0.0010 19 7 2.1779 -1.1432 -0.0004 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5137 23 1 1.6861 2.1380 0.0006 24 1 5.3130 2.2667 0.0836 25 1 3.6481 3.4842 -2.2802 26 1 2.1589 2.9126 -1.4902 27 1 2.4985 4.6568 -1.5931 28 1 4.2430 5.6780 -0.2926 29 1 5.1504 4.7632 0.9355 30 1 5.5080 4.5299 -0.7925 31 1 1.5507 6.6862 0.2488 32 1 4.0105 -2.1065 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260267662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:04 Heat of formation + Delta-G solvation = 45.862817 kcal Electronic energy + Delta-G solvation = -15417.040530 eV Core-core repulsion = 12991.687271 eV Total energy + Delta-G solvation = -2425.353259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15570 -36.97796 -33.85188 -32.61228 -31.01550 -28.89757 -27.68322 -25.86953 -25.39274 -23.23181 -21.47439 -19.67425 -17.21882 -16.70012 -15.77848 -15.01587 -14.42116 -14.25182 -14.08538 -13.56784 -13.02767 -12.53060 -12.34201 -11.90275 -11.69768 -11.56733 -11.26973 -10.99294 -10.87857 -10.73913 -10.47638 -10.20139 -9.94373 -9.69028 -9.17727 -8.82518 -8.57531 -8.44439 -7.07984 -6.21228 -4.30299 1.87333 2.21102 3.19882 3.25370 3.28963 4.02590 4.28517 4.68068 4.81670 5.04942 5.14654 5.60760 5.84450 5.96680 6.06204 6.33237 6.39638 6.48119 6.58856 6.62211 6.71191 6.77184 7.01624 7.13180 7.27536 7.44587 7.60692 7.70825 7.86909 8.04437 8.25254 8.61612 8.73063 9.08599 9.36374 10.79907 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.011560 C = 0.009163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.424460 B = 2421.476580 C = 3054.941622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.166 3.834 3 C -0.267 4.267 4 C 0.448 3.552 5 N -0.691 5.691 6 C 0.289 3.711 7 C -0.154 4.154 8 C -0.138 4.138 9 C -0.524 4.524 10 H 0.063 0.937 11 C 0.070 3.930 12 N -0.884 5.884 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.274 1.274 17 N -0.605 5.605 18 C 0.318 3.682 19 N -0.583 5.583 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.175 0.825 24 H 0.389 0.611 25 H 0.013 0.987 26 H 0.041 0.959 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -5.084 -1.133 5.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.027 3.973 3 C -0.294 4.294 4 C 0.202 3.798 5 N -0.318 5.318 6 C 0.205 3.795 7 C -0.212 4.212 8 C -0.196 4.196 9 C -0.563 4.563 10 H 0.081 0.919 11 C -0.133 4.133 12 N -0.521 5.521 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.332 5.332 18 C 0.027 3.973 19 N -0.305 5.305 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.192 0.808 24 H 0.223 0.777 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.207 -5.458 -1.210 5.594 hybrid contribution -0.520 0.902 0.824 1.328 sum -0.727 -4.556 -0.386 4.630 Atomic orbital electron populations 1.20640 0.89230 1.03075 1.02656 1.21278 0.96675 0.88247 0.91093 1.22915 0.94384 1.01874 1.10277 1.18586 0.89104 0.86222 0.85850 1.45379 1.08197 1.03644 1.74578 1.18268 0.90438 0.76689 0.94073 1.22317 0.99201 1.04035 0.95671 1.21974 0.96799 1.02296 0.98550 1.21319 1.21259 1.03142 1.10533 0.91903 1.24840 0.96951 0.95407 0.96089 1.69792 1.40586 1.07413 1.34303 0.86574 0.81208 0.77488 0.82387 1.20231 1.21113 1.19926 1.67903 1.41985 0.98190 1.25126 1.24234 0.86868 0.95418 0.90751 1.68077 1.09901 1.30364 1.22137 0.90720 0.90999 0.90543 0.80763 0.77726 0.96804 0.93982 0.88800 0.88443 0.94340 0.96454 0.92476 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.21 36.00 0.37 -1.15 16 2 C 0.17 3.20 6.82 -82.33 -0.56 2.64 16 3 C -0.27 -5.66 6.76 -39.11 -0.26 -5.93 16 4 C 0.45 9.64 7.20 -154.77 -1.11 8.53 16 5 N -0.69 -14.63 5.23 -48.66 -0.25 -14.89 16 6 C 0.29 6.52 0.79 -132.97 -0.11 6.41 16 7 C -0.15 -3.44 8.06 37.16 0.30 -3.14 16 8 C -0.14 -2.98 8.26 37.16 0.31 -2.68 16 9 C -0.52 -12.89 5.65 -34.44 -0.19 -13.08 16 10 H 0.06 1.63 6.95 -52.49 -0.36 1.26 16 11 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 12 N -0.88 -22.05 9.48 55.43 0.53 -21.52 16 13 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 N -0.60 -12.27 10.47 -13.81 -0.14 -12.41 16 18 C 0.32 5.82 12.28 -92.20 -1.13 4.69 16 19 N -0.58 -11.12 10.37 -10.88 -0.11 -11.24 16 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 23 H 0.18 3.95 4.20 -52.49 -0.22 3.73 16 24 H 0.39 7.61 8.60 -40.82 -0.35 7.26 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.93 5.32 -51.93 -0.28 0.66 16 27 H 0.09 2.24 6.17 -51.93 -0.32 1.92 16 28 H 0.10 2.27 6.30 -51.93 -0.33 1.95 16 29 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.18 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 260.29 15.07 3.92 3.92 Total: -1.00 -26.17 260.29 -7.53 -33.70 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.95 Total: 9.78 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.49 Total: -2.07 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.01 Total: -60.06 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.17 -7.53 -33.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.562 kcal (2) G-P(sol) polarization free energy of solvation -26.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds