Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32298 * 120.39853 * 2 1 4 4 C 1.32486 * 120.73895 * 180.02562 * 3 2 1 5 5 N 1.38399 * 119.21580 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.46496 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.32505 * 121.56332 * 0.28300 * 4 3 2 9 9 C 1.32263 * 120.74313 * 359.43839 * 8 4 3 10 10 C 1.38575 * 120.40120 * 180.02562 * 2 1 3 11 11 C 1.50702 * 120.72214 * 0.02562 * 10 2 1 12 12 C 1.50696 * 109.47114 * 85.00019 * 11 10 2 13 13 H 1.08000 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99790 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00331 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47209 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47246 * 119.99905 * 16 14 12 19 19 H 1.48504 * 109.47274 * 239.99588 * 16 14 12 20 20 H 1.09006 * 109.46801 * 89.99683 * 1 2 3 21 21 H 1.09002 * 109.47120 * 209.99746 * 1 2 3 22 22 H 1.09003 * 109.47128 * 330.00073 * 1 2 3 23 23 H 1.09001 * 109.47060 * 270.00137 * 6 5 4 24 24 H 1.09004 * 109.47073 * 29.99626 * 6 5 4 25 25 H 1.09000 * 109.47212 * 149.99708 * 6 5 4 26 26 H 1.08995 * 109.47445 * 270.00128 * 7 5 4 27 27 H 1.09001 * 109.47057 * 30.00756 * 7 5 4 28 28 H 1.08999 * 109.47333 * 150.00316 * 7 5 4 29 29 H 1.08001 * 120.40278 * 180.25481 * 9 8 4 30 30 H 1.09004 * 109.46672 * 204.99872 * 11 10 2 31 31 H 1.08998 * 109.46689 * 324.99919 * 11 10 2 32 32 H 0.96996 * 120.00222 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1764 1.1411 0.0000 4 6 3.5013 1.1490 -0.0005 5 7 4.1696 2.3609 0.0000 6 6 3.4124 3.6151 0.0018 7 6 5.6343 2.3897 -0.0011 8 7 4.2015 0.0241 -0.0066 9 6 3.5939 -1.1507 -0.0013 10 6 2.2082 -1.1952 -0.0005 11 6 1.4805 -2.5149 -0.0017 12 6 1.1300 -2.8940 -1.4175 13 1 1.4062 -2.2441 -2.2347 14 6 0.4558 -4.0699 -1.6694 15 7 0.1190 -4.8611 -0.6743 16 14 0.0207 -4.5396 -3.4243 17 1 0.5071 -3.4881 -4.3532 18 1 0.6618 -5.8354 -3.7633 19 1 -1.4533 -4.6684 -3.5513 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 3.2238 3.9270 -1.0255 24 1 2.4630 3.4656 0.5162 25 1 3.9868 4.3857 0.5159 26 1 5.9984 2.3958 1.0263 27 1 6.0146 1.5075 -0.5161 28 1 5.9797 3.2871 -0.5143 29 1 4.1701 -2.0641 -0.0022 30 1 2.1205 -3.2831 0.4323 31 1 0.5677 -2.4268 0.5875 32 1 -0.3550 -5.6885 -0.8516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = 50.929673 kcal Electronic energy + Delta-G solvation = -14751.508912 eV Core-core repulsion = 12326.375368 eV Total energy + Delta-G solvation = -2425.133544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35369 -36.58505 -33.81041 -33.36066 -31.59606 -28.69007 -27.78520 -27.06435 -24.93415 -22.71896 -22.10358 -20.28313 -17.19339 -16.70965 -16.38318 -15.27543 -14.70519 -14.29201 -13.81450 -13.73137 -13.15913 -12.56105 -12.45741 -12.28873 -12.21588 -12.03460 -11.89443 -11.65949 -11.19459 -11.09083 -10.61466 -10.45478 -9.90557 -9.65311 -9.42187 -9.00922 -8.54242 -8.29609 -7.19680 -6.06656 -4.11121 1.85363 2.01736 3.08338 3.27419 3.35770 3.40612 4.39284 4.60829 4.75719 5.05822 5.27374 5.36303 5.42657 5.47109 5.54976 5.78480 5.87451 5.92800 5.99058 6.20339 6.26429 6.30357 6.52668 6.69133 7.07466 7.21032 7.48917 7.54802 7.65594 7.88181 8.02195 8.28665 8.93250 8.93737 9.53312 11.02209 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043913 B = 0.006804 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.468903 B = 4114.292781 C = 4236.813667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.203 3.797 3 N -0.572 5.572 4 C 0.534 3.466 5 N -0.607 5.607 6 C 0.111 3.889 7 C 0.111 3.889 8 N -0.575 5.575 9 C 0.173 3.827 10 C -0.190 4.190 11 C 0.065 3.935 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.162 0.838 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 11.981 1.961 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 N -0.294 5.294 4 C 0.178 3.822 5 N -0.328 5.328 6 C -0.033 4.033 7 C -0.033 4.033 8 N -0.297 5.297 9 C 0.007 3.993 10 C -0.196 4.196 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.100 0.900 21 H 0.108 0.892 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.179 0.821 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.789 12.841 1.992 14.225 hybrid contribution -0.582 -1.148 -1.045 1.658 sum 5.207 11.692 0.947 12.834 Atomic orbital electron populations 1.20694 0.88261 1.02868 1.03513 1.21259 0.96904 0.86842 0.89333 1.67570 1.07439 1.31485 1.22942 1.19041 0.85328 0.86067 0.91725 1.45543 1.05213 1.01741 1.80330 1.21450 0.97014 0.83841 1.00953 1.21450 0.78485 1.02426 1.00895 1.67747 1.41181 0.98105 1.22678 1.22809 0.92143 0.94096 0.90208 1.21907 0.95457 0.99394 1.02892 1.18135 0.94973 0.86471 0.97701 1.21067 1.36592 1.05253 0.91906 0.92759 1.24974 0.95738 0.96308 0.97062 1.69952 1.40051 1.12429 1.30739 0.86528 0.78151 0.78456 0.84883 1.19801 1.20930 1.20898 0.89967 0.89219 0.91855 0.93848 0.90456 0.92181 0.93859 0.90419 0.92174 0.82112 0.95334 0.94737 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.83 36.00 0.35 -1.39 16 2 C 0.20 4.21 6.82 -82.27 -0.56 3.65 16 3 N -0.57 -11.51 9.05 -10.16 -0.09 -11.60 16 4 C 0.53 10.42 8.17 -322.81 -2.64 7.78 16 5 N -0.61 -9.56 3.37 -191.89 -0.65 -10.21 16 6 C 0.11 1.39 10.44 59.85 0.62 2.02 16 7 C 0.11 1.39 10.44 59.84 0.62 2.01 16 8 N -0.57 -11.51 9.11 -13.93 -0.13 -11.64 16 9 C 0.17 3.54 10.98 -17.22 -0.19 3.35 16 10 C -0.19 -4.17 5.10 -104.35 -0.53 -4.71 16 11 C 0.07 1.60 4.67 -29.04 -0.14 1.47 16 12 C -0.51 -13.75 9.09 -34.44 -0.31 -14.07 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 21 H 0.09 1.68 6.15 -51.93 -0.32 1.36 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 1.05 7.33 -51.93 -0.38 0.67 16 25 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.07 7.33 -51.93 -0.38 0.69 16 28 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 30 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.03 0.87 6.28 -51.93 -0.33 0.55 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -30.51 274.69 -8.19 -38.71 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.32 Total: -2.43 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.86 Total: 1.68 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.13 Total: -58.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.51 -8.19 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.639 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds