Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32298 * 120.39853 * 2 1 4 4 C 1.32486 * 120.73895 * 180.02562 * 3 2 1 5 5 N 1.38399 * 119.21580 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00229 * 0.02562 * 5 4 3 7 7 C 1.46496 * 120.00012 * 180.02562 * 5 4 3 8 8 N 1.32505 * 121.56332 * 0.28300 * 4 3 2 9 9 C 1.32263 * 120.74313 * 359.43839 * 8 4 3 10 10 C 1.38575 * 120.40120 * 180.02562 * 2 1 3 11 11 C 1.50702 * 120.72214 * 0.02562 * 10 2 1 12 12 C 1.50696 * 109.47114 * 85.00019 * 11 10 2 13 13 H 1.08000 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99790 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00331 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47209 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47246 * 119.99905 * 16 14 12 19 19 H 1.48504 * 109.47274 * 239.99588 * 16 14 12 20 20 H 1.09006 * 109.46801 * 89.99683 * 1 2 3 21 21 H 1.09002 * 109.47120 * 209.99746 * 1 2 3 22 22 H 1.09003 * 109.47128 * 330.00073 * 1 2 3 23 23 H 1.09001 * 109.47060 * 270.00137 * 6 5 4 24 24 H 1.09004 * 109.47073 * 29.99626 * 6 5 4 25 25 H 1.09000 * 109.47212 * 149.99708 * 6 5 4 26 26 H 1.08995 * 109.47445 * 270.00128 * 7 5 4 27 27 H 1.09001 * 109.47057 * 30.00756 * 7 5 4 28 28 H 1.08999 * 109.47333 * 150.00316 * 7 5 4 29 29 H 1.08001 * 120.40278 * 180.25481 * 9 8 4 30 30 H 1.09004 * 109.46672 * 204.99872 * 11 10 2 31 31 H 1.08998 * 109.46689 * 324.99919 * 11 10 2 32 32 H 0.96996 * 120.00222 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1764 1.1411 0.0000 4 6 3.5013 1.1490 -0.0005 5 7 4.1696 2.3609 0.0000 6 6 3.4124 3.6151 0.0018 7 6 5.6343 2.3897 -0.0011 8 7 4.2015 0.0241 -0.0066 9 6 3.5939 -1.1507 -0.0013 10 6 2.2082 -1.1952 -0.0005 11 6 1.4805 -2.5149 -0.0017 12 6 1.1300 -2.8940 -1.4175 13 1 1.4062 -2.2441 -2.2347 14 6 0.4558 -4.0699 -1.6694 15 7 0.1190 -4.8611 -0.6743 16 14 0.0207 -4.5396 -3.4243 17 1 0.5071 -3.4881 -4.3532 18 1 0.6618 -5.8354 -3.7633 19 1 -1.4533 -4.6684 -3.5513 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 3.2238 3.9270 -1.0255 24 1 2.4630 3.4656 0.5162 25 1 3.9868 4.3857 0.5159 26 1 5.9984 2.3958 1.0263 27 1 6.0146 1.5075 -0.5161 28 1 5.9797 3.2871 -0.5143 29 1 4.1701 -2.0641 -0.0022 30 1 2.1205 -3.2831 0.4323 31 1 0.5677 -2.4268 0.5875 32 1 -0.3550 -5.6885 -0.8516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = 34.607374 kcal Electronic energy + Delta-G solvation = -14752.216700 eV Core-core repulsion = 12326.375368 eV Total energy + Delta-G solvation = -2425.841332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.88590 -37.90715 -35.56519 -35.02594 -33.38044 -30.19836 -29.16678 -28.46776 -26.54134 -24.32941 -23.74915 -21.80610 -18.68191 -18.47348 -18.08137 -16.65782 -16.59823 -15.49379 -15.30540 -15.12398 -14.87005 -14.22425 -14.07324 -13.71931 -13.40518 -13.38328 -13.14541 -12.99949 -12.89733 -12.77746 -12.44949 -12.32326 -11.67077 -11.31610 -11.25684 -10.58075 -10.55791 -9.93300 -8.65320 -8.12917 -6.26929 0.26570 0.42215 1.40973 1.43410 1.54633 1.84152 2.42994 3.02241 3.15729 3.27813 3.74567 3.90966 4.30292 4.36450 4.47552 4.52838 4.58476 4.77882 4.79201 4.82902 4.94798 4.97401 5.00397 5.18770 5.37952 5.59484 5.67921 5.78861 6.04296 6.07772 6.22291 6.51914 6.83864 7.40443 7.41149 8.93357 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043913 B = 0.006804 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.468903 B = 4114.292781 C = 4236.813667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.200 3.800 3 N -0.577 5.577 4 C 0.524 3.476 5 N -0.605 5.605 6 C 0.106 3.894 7 C 0.106 3.894 8 N -0.581 5.581 9 C 0.174 3.826 10 C -0.220 4.220 11 C 0.079 3.921 12 C -0.519 4.519 13 H 0.045 0.955 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.275 1.275 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.173 0.827 30 H 0.009 0.991 31 H 0.021 0.979 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 13.686 1.291 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.300 5.300 4 C 0.168 3.832 5 N -0.325 5.325 6 C -0.036 4.036 7 C -0.036 4.036 8 N -0.304 5.304 9 C 0.009 3.991 10 C -0.227 4.227 11 C 0.041 3.959 12 C -0.557 4.557 13 H 0.063 0.937 14 C -0.185 4.185 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.201 1.201 20 H 0.100 0.900 21 H 0.097 0.903 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.190 0.810 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.394 14.599 1.325 15.993 hybrid contribution -0.673 -1.546 -0.798 1.866 sum 5.721 13.052 0.526 14.261 Atomic orbital electron populations 1.20673 0.86891 1.03559 1.03630 1.21568 0.98003 0.86730 0.88354 1.67687 1.07800 1.30738 1.23785 1.19612 0.85555 0.87332 0.90708 1.46045 1.06664 1.01284 1.78501 1.21666 0.96903 0.83215 1.01806 1.21665 0.76536 1.03469 1.01933 1.67851 1.40917 0.98092 1.23511 1.22995 0.91847 0.95010 0.89257 1.21676 0.96102 0.98587 1.06311 1.17833 0.94227 0.87526 0.96283 1.21276 1.36464 1.05244 0.92738 0.93682 1.25728 0.95645 0.96265 1.00861 1.70050 1.40811 1.12918 1.32713 0.85541 0.78124 0.78063 0.80172 1.19656 1.20421 1.20099 0.89976 0.90317 0.89300 0.93093 0.91769 0.88461 0.92736 0.91988 0.88590 0.80980 0.97317 0.96072 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.83 71.24 0.70 -2.56 16 2 C 0.20 8.28 6.82 42.57 0.29 8.57 16 3 N -0.58 -22.66 9.05 -186.05 -1.68 -24.34 16 4 C 0.52 19.79 8.17 261.49 2.14 21.92 16 5 N -0.61 -17.53 3.37 -761.03 -2.57 -20.10 16 6 C 0.11 2.34 10.44 127.77 1.33 3.67 16 7 C 0.11 2.34 10.44 127.77 1.33 3.68 16 8 N -0.58 -22.86 9.11 -197.97 -1.80 -24.67 16 9 C 0.17 7.20 10.98 84.72 0.93 8.13 16 10 C -0.22 -9.80 5.10 -19.69 -0.10 -9.90 16 11 C 0.08 4.03 4.67 29.10 0.14 4.16 16 12 C -0.52 -28.42 9.09 25.60 0.23 -28.19 16 13 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 16 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 21 H 0.08 3.00 6.15 -2.39 -0.01 2.98 16 22 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.60 7.33 -2.38 -0.02 1.58 16 25 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.58 7.33 -2.39 -0.02 1.57 16 28 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.17 6.47 8.06 -2.91 -0.02 6.45 16 30 H 0.01 0.46 8.07 -2.38 -0.02 0.44 16 31 H 0.02 1.11 6.28 -2.39 -0.02 1.10 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -64.70 274.69 4.82 -59.89 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.10 Total: 6.30 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.46 Total: 10.70 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.77 Total: -122.24 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.70 4.82 -59.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.494 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds