Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31273 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99509 * 3 2 1 6 6 H 1.48501 * 109.46889 * 59.99799 * 3 2 1 7 7 C 1.39000 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.37426 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.35317 * 126.87388 * 0.02562 * 9 7 2 11 11 N 1.30815 * 107.96054 * 179.97438 * 10 9 7 12 12 C 1.33374 * 109.87321 * 359.97438 * 11 10 9 13 13 C 1.50706 * 125.45282 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46957 * 300.02636 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 17 17 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 18 18 C 1.52996 * 109.46972 * 299.99733 * 17 16 15 19 19 N 1.30831 * 109.08748 * 0.23943 * 12 11 10 20 20 H 0.97001 * 119.99456 * 0.02562 * 1 2 3 21 21 H 1.07994 * 126.02006 * 359.97438 * 10 9 7 22 22 H 1.08993 * 109.46700 * 180.02562 * 13 12 11 23 23 H 1.08993 * 109.47839 * 60.00178 * 14 13 12 24 24 H 1.09000 * 109.47160 * 299.99740 * 14 13 12 25 25 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 26 26 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 27 27 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 29 29 H 1.08996 * 109.47407 * 60.00219 * 17 16 15 30 30 H 1.09000 * 109.46986 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.46993 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47380 * 299.99696 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 3.7068 1.3463 0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8879 2.3964 1.2125 7 6 2.0077 -1.2038 0.0005 8 1 3.0877 -1.2038 0.0010 9 7 1.3206 -2.3939 0.0005 10 6 -0.0229 -2.5559 -0.0004 11 7 -0.2744 -3.8396 -0.0006 12 6 0.8693 -4.5257 -0.0003 13 6 0.9873 -6.0282 0.0001 14 6 0.3076 -6.5927 1.2492 15 6 0.4280 -8.1180 1.2499 16 6 -0.2501 -8.6837 0.0005 17 6 0.4296 -8.1191 -1.2486 18 6 0.3092 -6.5939 -1.2493 19 7 1.8722 -3.6856 0.0052 20 1 -0.4849 0.8401 -0.0004 21 1 -0.7579 -1.7647 -0.0010 22 1 2.0402 -6.3098 0.0007 23 1 -0.7453 -6.3111 1.2486 24 1 0.7909 -6.1900 2.1393 25 1 1.4811 -8.3993 1.2507 26 1 -0.0558 -8.5203 2.1399 27 1 -0.1647 -9.7704 0.0012 28 1 -1.3031 -8.4024 -0.0003 29 1 1.4826 -8.4005 -1.2478 30 1 -0.0532 -8.5225 -2.1387 31 1 0.7930 -6.1916 -2.1393 32 1 -0.7439 -6.3125 -1.2501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = 48.921943 kcal Electronic energy + Delta-G solvation = -14877.769377 eV Core-core repulsion = 12452.548772 eV Total energy + Delta-G solvation = -2425.220605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30948 -37.89842 -34.23434 -31.59199 -30.38109 -30.33659 -28.69005 -25.36980 -22.56552 -22.15444 -20.98372 -19.57237 -18.67995 -17.89484 -15.31844 -15.15631 -14.32810 -14.01641 -14.00139 -13.80041 -13.65546 -12.69126 -12.16120 -12.10353 -11.83049 -11.73312 -11.37559 -11.36742 -10.75864 -10.73077 -10.61446 -10.08677 -10.03959 -10.00691 -9.85629 -9.59543 -8.44483 -8.34194 -7.89662 -6.90339 -4.56722 2.84748 2.96526 3.04866 3.45025 3.67531 4.43458 4.63916 4.83848 5.05655 5.14401 5.16084 5.59476 5.66218 5.68291 5.87109 5.87224 5.95677 5.98343 6.15768 6.27920 6.36124 6.45576 6.53650 6.62083 6.69692 6.82053 6.90503 7.00436 7.24807 7.72780 8.19464 8.36097 8.56427 9.28643 9.96414 10.12761 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075379 B = 0.006049 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.364970 B = 4627.514707 C = 4658.101437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.033 3.967 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.287 4.287 8 H 0.115 0.885 9 N -0.187 5.187 10 C 0.171 3.829 11 N -0.582 5.582 12 C 0.162 3.838 13 C 0.027 3.973 14 C -0.105 4.105 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.105 4.105 19 N -0.389 5.389 20 H 0.285 0.715 21 H 0.232 0.768 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -7.974 -0.011 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.421 4.421 8 H 0.133 0.867 9 N 0.040 4.960 10 C -0.117 4.117 11 N -0.315 5.315 12 C -0.117 4.117 13 C 0.006 3.994 14 C -0.143 4.143 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.143 4.143 19 N -0.228 5.228 20 H 0.096 0.904 21 H 0.247 0.753 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.081 -8.074 -0.005 8.074 hybrid contribution 0.263 1.214 0.000 1.242 sum 0.344 -6.860 -0.005 6.869 Atomic orbital electron populations 1.69460 1.06596 1.29254 1.42886 1.25663 0.95941 1.00957 0.95069 0.85304 0.79360 0.78265 0.78523 1.18566 1.19723 1.19728 1.20021 0.93493 0.79503 1.49048 0.86746 1.46284 1.05454 1.03826 1.40418 1.26974 0.86690 0.93978 1.04037 1.70166 1.28789 1.03483 1.29066 1.23427 0.87594 0.95921 1.04760 1.19074 0.99435 0.85765 0.95135 1.21480 1.01799 0.93846 0.97188 1.21547 1.00451 0.96062 0.97424 1.21531 1.00048 0.99001 0.94979 1.21544 1.00446 0.96061 0.97427 1.21476 1.01808 0.93840 0.97185 1.77784 1.22594 0.88459 1.33972 0.90368 0.75311 0.90877 0.91066 0.92502 0.92304 0.92376 0.92669 0.91947 0.92305 0.92375 0.92496 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.35 10.21 55.50 0.57 -20.78 16 2 C 0.03 0.81 5.48 -17.51 -0.10 0.71 16 3 Si 0.96 18.64 29.55 -169.99 -5.02 13.62 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 7 C -0.29 -7.77 10.60 -14.76 -0.16 -7.93 16 8 H 0.11 2.97 7.83 -52.48 -0.41 2.56 16 9 N -0.19 -5.34 3.74 -12.74 -0.05 -5.39 16 10 C 0.17 4.77 11.56 -89.86 -1.04 3.74 16 11 N -0.58 -15.47 11.19 -11.72 -0.13 -15.60 16 12 C 0.16 4.07 6.65 -156.63 -1.04 3.03 16 13 C 0.03 0.53 2.66 -91.77 -0.24 0.28 16 14 C -0.10 -1.79 5.19 -26.73 -0.14 -1.93 16 15 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 16 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 17 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 18 C -0.10 -1.79 5.19 -26.73 -0.14 -1.93 16 19 N -0.39 -10.79 12.64 32.47 0.41 -10.38 16 20 H 0.29 6.48 8.31 -40.82 -0.34 6.14 16 21 H 0.23 6.30 5.54 -52.49 -0.29 6.01 16 22 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 264.97 15.07 3.99 3.99 Total: -1.00 -29.34 264.97 -8.05 -37.39 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.49 Total: 6.20 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.33 Total: -9.06 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.80 Total: -52.15 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.34 -8.05 -37.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.313 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds