Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31273 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99509 * 3 2 1 6 6 H 1.48501 * 109.46889 * 59.99799 * 3 2 1 7 7 C 1.39000 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.37426 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.35317 * 126.87388 * 0.02562 * 9 7 2 11 11 N 1.30815 * 107.96054 * 179.97438 * 10 9 7 12 12 C 1.33374 * 109.87321 * 359.97438 * 11 10 9 13 13 C 1.50706 * 125.45282 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46957 * 300.02636 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 17 17 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 18 18 C 1.52996 * 109.46972 * 299.99733 * 17 16 15 19 19 N 1.30831 * 109.08748 * 0.23943 * 12 11 10 20 20 H 0.97001 * 119.99456 * 0.02562 * 1 2 3 21 21 H 1.07994 * 126.02006 * 359.97438 * 10 9 7 22 22 H 1.08993 * 109.46700 * 180.02562 * 13 12 11 23 23 H 1.08993 * 109.47839 * 60.00178 * 14 13 12 24 24 H 1.09000 * 109.47160 * 299.99740 * 14 13 12 25 25 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 26 26 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 27 27 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 29 29 H 1.08996 * 109.47407 * 60.00219 * 17 16 15 30 30 H 1.09000 * 109.46986 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.46993 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47380 * 299.99696 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 3.7068 1.3463 0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8879 2.3964 1.2125 7 6 2.0077 -1.2038 0.0005 8 1 3.0877 -1.2038 0.0010 9 7 1.3206 -2.3939 0.0005 10 6 -0.0229 -2.5559 -0.0004 11 7 -0.2744 -3.8396 -0.0006 12 6 0.8693 -4.5257 -0.0003 13 6 0.9873 -6.0282 0.0001 14 6 0.3076 -6.5927 1.2492 15 6 0.4280 -8.1180 1.2499 16 6 -0.2501 -8.6837 0.0005 17 6 0.4296 -8.1191 -1.2486 18 6 0.3092 -6.5939 -1.2493 19 7 1.8722 -3.6856 0.0052 20 1 -0.4849 0.8401 -0.0004 21 1 -0.7579 -1.7647 -0.0010 22 1 2.0402 -6.3098 0.0007 23 1 -0.7453 -6.3111 1.2486 24 1 0.7909 -6.1900 2.1393 25 1 1.4811 -8.3993 1.2507 26 1 -0.0558 -8.5203 2.1399 27 1 -0.1647 -9.7704 0.0012 28 1 -1.3031 -8.4024 -0.0003 29 1 1.4826 -8.4005 -1.2478 30 1 -0.0532 -8.5225 -2.1387 31 1 0.7930 -6.1916 -2.1393 32 1 -0.7439 -6.3125 -1.2501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = 33.133280 kcal Electronic energy + Delta-G solvation = -14878.454025 eV Core-core repulsion = 12452.548772 eV Total energy + Delta-G solvation = -2425.905253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.34204 -39.22423 -36.18303 -33.32207 -32.20710 -31.60602 -30.55578 -27.32460 -24.04845 -23.37935 -23.05240 -20.94543 -20.53212 -19.77928 -17.31347 -16.56439 -15.99635 -15.89827 -15.70836 -14.96720 -14.96622 -14.47820 -13.74104 -13.61148 -13.50000 -13.05851 -13.04896 -12.93964 -12.15128 -12.09018 -12.03816 -11.96128 -11.70432 -11.32697 -11.13458 -10.98476 -10.46618 -10.41961 -9.97967 -8.82854 -6.63016 1.11777 1.35255 1.56697 1.63232 2.01782 2.43737 2.71438 2.83109 3.67338 3.81346 3.95825 4.17230 4.29269 4.44170 4.52312 4.61005 4.66529 4.70959 4.77272 4.88315 5.02827 5.14057 5.17732 5.31078 5.33578 5.33690 5.41370 5.48522 5.62538 5.75951 6.20004 6.32882 6.53043 7.20977 7.89398 8.21616 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.075379 B = 0.006049 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.364970 B = 4627.514707 C = 4658.101437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.000 4.000 3 Si 1.042 2.958 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.331 4.331 8 H 0.115 0.885 9 N -0.198 5.198 10 C 0.144 3.856 11 N -0.592 5.592 12 C 0.164 3.836 13 C 0.024 3.976 14 C -0.099 4.099 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.099 4.099 19 N -0.426 5.426 20 H 0.298 0.702 21 H 0.230 0.770 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -8.538 -0.013 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.207 4.207 3 Si 0.859 3.141 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.133 0.867 9 N 0.029 4.971 10 C -0.143 4.143 11 N -0.325 5.325 12 C -0.116 4.116 13 C 0.002 3.998 14 C -0.137 4.137 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.137 4.137 19 N -0.265 5.265 20 H 0.110 0.890 21 H 0.245 0.755 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.425 -8.666 -0.008 8.676 hybrid contribution 0.104 1.443 0.001 1.447 sum 0.529 -7.223 -0.007 7.242 Atomic orbital electron populations 1.69482 1.08078 1.31163 1.41228 1.26888 0.96837 1.04015 0.92952 0.84205 0.77967 0.72719 0.79223 1.18016 1.18426 1.18440 1.20533 0.94058 0.80110 1.51700 0.86708 1.46570 1.05767 1.04485 1.40238 1.27051 0.86793 0.94632 1.05823 1.70170 1.29441 1.03210 1.29654 1.24489 0.86519 0.98153 1.02426 1.19388 1.00406 0.82357 0.97605 1.21426 1.00081 0.97062 0.95173 1.21525 1.01707 0.92455 0.99043 1.21545 0.99460 1.00739 0.93558 1.21522 1.01702 0.92458 0.99044 1.21423 1.00094 0.97052 0.95170 1.77727 1.24031 0.88813 1.35951 0.89003 0.75508 0.90405 0.92707 0.94018 0.91134 0.90427 0.89526 0.92323 0.91133 0.90420 0.93999 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.78 10.21 21.66 0.22 -43.55 16 2 C 0.00 0.01 5.48 84.96 0.47 0.48 16 3 Si 1.04 37.08 29.55 68.60 2.03 39.11 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 6 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.33 -18.36 10.60 84.00 0.89 -17.47 16 8 H 0.12 6.13 7.83 -2.91 -0.02 6.10 16 9 N -0.20 -11.73 3.74 -194.23 -0.73 -12.45 16 10 C 0.14 8.37 11.56 180.08 2.08 10.45 16 11 N -0.59 -32.62 11.19 -190.99 -2.14 -34.75 16 12 C 0.16 8.48 6.65 138.56 0.92 9.40 16 13 C 0.02 0.92 2.66 -11.54 -0.03 0.89 16 14 C -0.10 -3.36 5.19 30.60 0.16 -3.20 16 15 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 16 C -0.12 -2.46 5.92 30.59 0.18 -2.28 16 17 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 18 C -0.10 -3.35 5.19 30.59 0.16 -3.19 16 19 N -0.43 -24.48 12.64 -51.20 -0.65 -25.13 16 20 H 0.30 13.35 8.31 -92.71 -0.77 12.58 16 21 H 0.23 13.01 5.54 -2.91 -0.02 13.00 16 22 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.43 264.97 5.03 -60.41 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 1.10 Total: 26.18 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.19 Total: -9.80 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.29 Total: -115.89 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -65.43 5.03 -60.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.539 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds