Wall clock time and date at job start Mon Mar 30 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00256 * 2 1 4 4 H 1.48501 * 109.47394 * 264.65350 * 3 2 1 5 5 H 1.48502 * 109.47519 * 24.65473 * 3 2 1 6 6 H 1.48502 * 109.46954 * 144.65343 * 3 2 1 7 7 C 1.37882 * 119.99413 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00582 * 5.22056 * 7 2 1 9 9 C 1.50700 * 119.99514 * 185.22300 * 7 2 1 10 10 H 1.09004 * 109.47616 * 325.85168 * 9 7 2 11 11 C 1.53007 * 109.46878 * 205.85373 * 9 7 2 12 12 N 1.46896 * 109.47029 * 65.46723 * 11 9 7 13 13 C 1.50702 * 109.47412 * 85.85352 * 9 7 2 14 14 C 1.39871 * 125.89636 * 35.23531 * 13 9 7 15 15 C 1.35309 * 107.91908 * 180.14604 * 14 13 9 16 16 C 1.50707 * 126.12537 * 179.90528 * 15 14 13 17 17 C 1.53000 * 117.49669 * 214.70808 * 16 15 14 18 18 C 1.52999 * 59.99997 * 252.51061 * 17 16 15 19 19 N 1.34942 * 107.74892 * 359.63636 * 15 14 13 20 20 H 0.97004 * 126.04164 * 180.21599 * 19 15 14 21 21 N 1.30834 * 125.90283 * 214.97157 * 13 9 7 22 22 H 0.97003 * 119.99671 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46821 * 185.46355 * 11 9 7 24 24 H 1.08992 * 109.46977 * 305.46502 * 11 9 7 25 25 H 1.00897 * 110.99924 * 184.52975 * 12 11 9 26 26 H 1.00899 * 110.99962 * 308.48049 * 12 11 9 27 27 H 1.08005 * 126.04285 * 0.02562 * 14 13 9 28 28 H 1.08993 * 115.56181 * 0.40107 * 16 15 14 29 29 H 1.09000 * 117.49876 * 145.02311 * 17 16 15 30 30 H 1.08997 * 117.49979 * 0.02562 * 17 16 15 31 31 H 1.08999 * 117.49959 * 107.49550 * 18 17 16 32 32 H 1.09004 * 117.49919 * 252.48561 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3948 2.6826 0.5840 6 1 3.4857 1.4752 0.8100 7 6 2.0044 -1.1942 -0.0005 8 1 1.4678 -2.1274 -0.0860 9 6 3.5067 -1.1970 0.1183 10 1 3.9130 -0.3215 -0.3884 11 6 4.0670 -2.4658 -0.5276 12 7 3.8011 -2.4384 -1.9721 13 6 3.8957 -1.1604 1.5738 14 6 3.2106 -1.7842 2.6216 15 6 3.8715 -1.5130 3.7708 16 6 3.4855 -1.9828 5.1498 17 6 3.7590 -1.0366 6.3207 18 6 4.6162 -2.2901 6.1336 19 7 4.9414 -0.7516 3.4602 20 1 5.5987 -0.4086 4.0857 21 7 4.9351 -0.5437 2.0749 22 1 -0.4850 0.8401 0.0004 23 1 5.1425 -2.5159 -0.3570 24 1 3.5881 -3.3399 -0.0866 25 1 4.0955 -3.2982 -2.4103 26 1 2.8266 -2.2535 -2.1569 27 1 2.3118 -2.3760 2.5300 28 1 2.5905 -2.6027 5.2021 29 1 3.0439 -1.0341 7.1433 30 1 4.2177 -0.0743 6.0936 31 1 5.6392 -2.1526 5.7836 32 1 4.4653 -3.1120 6.8335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:06 Heat of formation + Delta-G solvation = 65.135989 kcal Electronic energy + Delta-G solvation = -14918.403254 eV Core-core repulsion = 12493.885742 eV Total energy + Delta-G solvation = -2424.517512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14759 -38.12894 -36.92569 -34.29000 -32.71366 -30.83202 -29.84290 -26.19637 -24.28196 -23.29281 -22.91304 -21.17236 -20.20441 -18.94117 -18.21468 -16.54138 -16.42642 -16.28642 -15.81098 -15.35346 -14.91692 -14.58727 -14.22971 -13.86976 -13.45303 -13.39001 -12.95858 -12.55037 -12.47144 -11.97883 -11.89610 -11.67790 -11.63095 -11.40726 -11.13878 -10.69424 -9.92722 -9.40981 -9.28450 -8.29376 -6.30585 0.97191 1.32113 1.34444 1.50465 1.98954 2.07477 2.36504 3.02259 3.07478 3.50499 3.82762 3.91073 4.07197 4.19947 4.31495 4.43315 4.57875 4.71059 4.84999 4.90841 4.97642 5.08979 5.11706 5.17465 5.31215 5.43568 5.63819 5.88859 6.25128 6.42714 6.59056 6.73525 6.88143 6.97340 7.36379 8.85235 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.009768 C = 0.008497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.744002 B = 2865.746367 C = 3294.623519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.487 4.487 8 H 0.050 0.950 9 C 0.084 3.916 10 H 0.035 0.965 11 C 0.098 3.902 12 N -0.849 5.849 13 C 0.098 3.902 14 C -0.266 4.266 15 C 0.117 3.883 16 C -0.115 4.115 17 C -0.165 4.165 18 C -0.152 4.152 19 N -0.479 5.479 20 H 0.441 0.559 21 N -0.344 5.344 22 H 0.264 0.736 23 H 0.056 0.944 24 H 0.019 0.981 25 H 0.344 0.656 26 H 0.348 0.652 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.783 -4.485 11.414 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.161 4.161 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.063 3.937 10 H 0.053 0.947 11 C -0.034 4.034 12 N -0.381 5.381 13 C -0.069 4.069 14 C -0.296 4.296 15 C -0.012 4.012 16 C -0.136 4.136 17 C -0.202 4.202 18 C -0.189 4.189 19 N -0.188 5.188 20 H 0.286 0.714 21 N -0.168 5.168 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.157 0.843 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.153 -3.037 11.123 15.363 hybrid contribution -1.175 -0.116 0.429 1.257 sum 8.978 -3.153 11.552 14.966 Atomic orbital electron populations 1.69997 1.07517 1.27686 1.51986 1.25534 0.95048 1.01599 0.93939 0.86155 0.79584 0.80649 0.79231 1.19283 1.22124 1.18238 1.20812 0.89622 0.93220 1.48933 0.93142 1.17656 0.94980 0.96142 0.84943 0.94652 1.21388 0.98019 0.95644 0.88356 1.58690 1.27342 1.41306 1.10713 1.23217 0.90979 0.93743 0.98926 1.21089 1.05137 1.12130 0.91205 1.20447 0.89585 0.95163 0.95966 1.20730 1.02922 1.05903 0.83998 1.23163 1.03759 0.94629 0.98685 1.23162 0.95103 1.00188 1.00428 1.46056 1.23179 1.43143 1.06459 0.71387 1.77209 1.23792 1.27024 0.88737 0.92647 0.92555 0.96229 0.84343 0.83819 0.85079 0.84730 0.85911 0.89164 0.88616 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.96 21.45 0.30 -56.52 16 2 C 0.04 2.20 5.47 84.66 0.46 2.67 16 3 Si 0.92 46.85 26.70 68.60 1.83 48.68 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 6 H -0.26 -13.34 6.58 99.48 0.65 -12.68 16 7 C -0.49 -26.75 7.20 25.60 0.18 -26.57 16 8 H 0.05 2.97 8.05 -2.92 -0.02 2.95 16 9 C 0.08 4.09 2.01 -12.28 -0.02 4.07 16 10 H 0.04 1.84 5.86 -2.39 -0.01 1.82 16 11 C 0.10 4.07 6.22 86.31 0.54 4.61 16 12 N -0.85 -32.28 9.65 -186.72 -1.80 -34.08 16 13 C 0.10 4.56 5.33 43.10 0.23 4.79 16 14 C -0.27 -11.50 9.94 21.99 0.22 -11.29 16 15 C 0.12 4.03 6.63 41.41 0.27 4.30 16 16 C -0.12 -2.78 6.25 -11.54 -0.07 -2.86 16 17 C -0.16 -2.98 10.22 30.59 0.31 -2.67 16 18 C -0.15 -2.50 10.21 30.59 0.31 -2.18 16 19 N -0.48 -16.46 7.31 -48.00 -0.35 -16.81 16 20 H 0.44 11.47 8.96 -213.33 -1.91 9.56 16 21 N -0.34 -15.17 12.70 -47.38 -0.60 -15.77 16 22 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.34 10.47 9.08 -89.70 -0.81 9.66 16 26 H 0.35 14.25 7.98 -89.69 -0.72 13.53 16 27 H 0.13 5.87 8.00 -2.91 -0.02 5.85 16 28 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -68.18 273.84 -0.53 -68.71 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -2.34 Total: 30.91 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 2.44 Total: -25.12 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -2.46 Total: -123.18 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.83 Total: 48.68 kcal Total: -68.18 -0.53 -68.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.846 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds