Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48503 * 109.46960 * 264.85430 * 3 2 1 5 5 H 1.48502 * 109.47266 * 24.85354 * 3 2 1 6 6 H 1.48502 * 109.47266 * 144.85645 * 3 2 1 7 7 C 1.37887 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99955 * 4.79822 * 7 2 1 9 9 C 1.50704 * 119.99688 * 184.79646 * 7 2 1 10 10 H 1.09003 * 109.46746 * 335.11754 * 9 7 2 11 11 C 1.52994 * 109.47213 * 95.11941 * 9 7 2 12 12 N 1.46892 * 109.47383 * 185.50867 * 11 9 7 13 13 C 1.50699 * 109.46737 * 215.11863 * 9 7 2 14 14 C 1.39872 * 125.90069 * 325.00140 * 13 9 7 15 15 C 1.35307 * 107.91895 * 179.97438 * 14 13 9 16 16 C 1.50705 * 126.12795 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.49947 * 144.99670 * 16 15 14 18 18 C 1.53003 * 60.02927 * 107.50469 * 17 16 15 19 19 N 1.34945 * 107.74845 * 0.22579 * 15 14 13 20 20 H 0.97003 * 126.04206 * 179.76997 * 19 15 14 21 21 N 1.30839 * 125.89735 * 144.95855 * 13 9 7 22 22 H 0.97002 * 119.99640 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47265 * 305.51211 * 11 9 7 24 24 H 1.09007 * 109.47421 * 65.50498 * 11 9 7 25 25 H 1.00900 * 111.00515 * 180.02562 * 12 11 9 26 26 H 1.00902 * 111.00145 * 303.95486 * 12 11 9 27 27 H 1.07994 * 126.03696 * 359.94078 * 14 13 9 28 28 H 1.09007 * 115.55780 * 359.31653 * 16 15 14 29 29 H 1.09003 * 117.49953 * 0.02562 * 17 16 15 30 30 H 1.08997 * 117.49851 * 215.00322 * 17 16 15 31 31 H 1.08999 * 117.49629 * 107.47516 * 18 17 16 32 32 H 1.09001 * 117.49918 * 252.47535 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6054 1.9835 -1.3945 5 1 1.3966 2.6817 0.5885 6 1 3.4882 1.4739 0.8059 7 6 2.0045 -1.1942 0.0005 8 1 1.4673 -2.1278 -0.0773 9 6 3.5075 -1.1964 0.1097 10 1 3.8998 -0.2476 -0.2564 11 6 3.9124 -1.3852 1.5729 12 7 5.3702 -1.2559 1.6983 13 6 4.0694 -2.3246 -0.7165 14 6 3.4778 -3.5782 -0.9031 15 6 4.2882 -4.3056 -1.7062 16 6 4.0437 -5.7185 -2.1701 17 6 4.5083 -6.0895 -3.5799 18 6 5.2650 -6.6214 -2.3610 19 7 5.3573 -3.5414 -2.0127 20 1 6.1053 -3.8041 -2.5716 21 7 5.1945 -2.3003 -1.3839 22 1 -0.4850 0.8401 0.0004 23 1 3.4262 -0.6258 2.1853 24 1 3.6051 -2.3752 1.9102 25 1 5.6630 -1.3771 2.6563 26 1 5.8446 -1.9068 1.0905 27 1 2.5401 -3.9075 -0.4804 28 1 3.1275 -6.1819 -1.8039 29 1 4.9912 -5.3118 -4.1717 30 1 3.8978 -6.7967 -4.1412 31 1 5.1517 -7.6784 -2.1203 32 1 6.2454 -6.1938 -2.1513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260293980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = 89.807605 kcal Electronic energy + Delta-G solvation = -14829.992688 eV Core-core repulsion = 12406.545018 eV Total energy + Delta-G solvation = -2423.447670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.72349 -37.09952 -35.21675 -32.35269 -30.94467 -29.44258 -28.41669 -23.65732 -23.16149 -22.54120 -21.73593 -19.86280 -18.15447 -17.15062 -16.74779 -15.37657 -15.35046 -14.16479 -14.05397 -13.83940 -13.55311 -13.20075 -12.55959 -12.34922 -12.02097 -11.76506 -11.40373 -10.99841 -10.74497 -10.68248 -10.52946 -10.15593 -10.05260 -9.68859 -9.10074 -8.54594 -8.43781 -7.89046 -7.85976 -6.07529 -4.08968 2.33284 3.36261 3.42341 3.45089 3.52548 3.55555 3.95241 4.47449 4.49263 4.71367 4.87942 5.19629 5.25215 5.42881 5.45050 5.65136 5.68175 5.87782 5.89438 6.29709 6.37691 6.46923 6.55394 6.78761 7.07522 7.18374 7.49010 7.66179 7.83192 7.93961 8.14906 8.42107 8.59848 8.98006 9.54435 11.04290 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.008132 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.283233 B = 3442.301167 C = 3810.866442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.253 1.253 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.087 3.913 10 H 0.055 0.945 11 C 0.074 3.926 12 N -0.856 5.856 13 C 0.124 3.876 14 C -0.234 4.234 15 C 0.090 3.910 16 C -0.083 4.083 17 C -0.175 4.175 18 C -0.177 4.177 19 N -0.494 5.494 20 H 0.424 0.576 21 N -0.309 5.309 22 H 0.265 0.735 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.323 0.677 26 H 0.334 0.666 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -11.047 -2.875 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.177 1.177 7 C -0.548 4.548 8 H 0.099 0.901 9 C 0.066 3.934 10 H 0.073 0.927 11 C -0.058 4.058 12 N -0.385 5.385 13 C -0.043 4.043 14 C -0.263 4.263 15 C -0.037 4.037 16 C -0.103 4.103 17 C -0.213 4.213 18 C -0.214 4.214 19 N -0.202 5.202 20 H 0.266 0.734 21 N -0.131 5.131 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.037 0.963 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.072 -9.478 -3.444 14.252 hybrid contribution -0.087 -0.778 0.095 0.788 sum 9.985 -10.256 -3.349 14.700 Atomic orbital electron populations 1.69888 1.06290 1.27159 1.49868 1.25009 0.94724 0.98944 0.93901 0.86953 0.80786 0.83427 0.79287 1.20174 1.21596 1.17699 1.20838 0.87818 0.95025 1.51087 0.90140 1.17805 0.95881 0.90941 0.88781 0.92744 1.22166 0.85612 0.98872 0.99112 1.58923 1.08083 1.60645 1.10814 1.23024 0.90061 0.96137 0.95036 1.21149 1.03067 0.94979 1.07115 1.19980 0.90704 0.92730 1.00291 1.20606 0.99708 0.90406 0.99627 1.23035 1.03931 1.03570 0.90719 1.23043 0.96106 0.99728 1.02568 1.46161 1.19146 1.11406 1.43468 0.73409 1.77387 1.21072 0.99074 1.15590 0.92519 0.91082 0.96265 0.86606 0.85381 0.83782 0.85411 0.88908 0.87975 0.88045 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 21.90 26.99 -169.99 -4.59 17.31 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.25 -6.26 6.82 56.52 0.39 -5.88 16 7 C -0.51 -14.08 8.58 -34.43 -0.30 -14.38 16 8 H 0.08 2.36 6.94 -52.49 -0.36 1.99 16 9 C 0.09 2.14 2.10 -92.93 -0.20 1.94 16 10 H 0.05 1.42 5.29 -51.93 -0.27 1.15 16 11 C 0.07 1.61 6.21 -3.83 -0.02 1.59 16 12 N -0.86 -16.48 9.62 -10.37 -0.10 -16.58 16 13 C 0.12 2.78 5.31 -82.40 -0.44 2.35 16 14 C -0.23 -4.76 9.84 -40.02 -0.39 -5.16 16 15 C 0.09 1.50 6.63 -82.27 -0.55 0.96 16 16 C -0.08 -1.03 6.25 -91.73 -0.57 -1.60 16 17 C -0.18 -1.74 10.22 -26.73 -0.27 -2.02 16 18 C -0.18 -1.69 10.22 -26.69 -0.27 -1.96 16 19 N -0.49 -8.23 7.31 33.48 0.24 -7.99 16 20 H 0.42 5.53 8.96 -182.61 -1.64 3.90 16 21 N -0.31 -6.48 12.30 33.67 0.41 -6.06 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 24 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 25 H 0.32 5.22 9.08 -39.29 -0.36 4.86 16 26 H 0.33 6.37 7.78 -39.29 -0.31 6.06 16 27 H 0.14 2.94 7.33 -52.49 -0.38 2.56 16 28 H 0.13 1.47 8.14 -51.92 -0.42 1.04 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -31.45 272.73 -7.69 -39.14 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.43 Total: 12.41 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -3.11 Total: -16.18 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 1.33 Total: -56.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.31 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.45 -7.69 -39.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.943 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds