Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48503 * 109.46960 * 264.85430 * 3 2 1 5 5 H 1.48502 * 109.47266 * 24.85354 * 3 2 1 6 6 H 1.48502 * 109.47266 * 144.85645 * 3 2 1 7 7 C 1.37887 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99955 * 4.79822 * 7 2 1 9 9 C 1.50704 * 119.99688 * 184.79646 * 7 2 1 10 10 H 1.09003 * 109.46746 * 335.11754 * 9 7 2 11 11 C 1.52994 * 109.47213 * 95.11941 * 9 7 2 12 12 N 1.46892 * 109.47383 * 185.50867 * 11 9 7 13 13 C 1.50699 * 109.46737 * 215.11863 * 9 7 2 14 14 C 1.39872 * 125.90069 * 325.00140 * 13 9 7 15 15 C 1.35307 * 107.91895 * 179.97438 * 14 13 9 16 16 C 1.50705 * 126.12795 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.49947 * 144.99670 * 16 15 14 18 18 C 1.53003 * 60.02927 * 107.50469 * 17 16 15 19 19 N 1.34945 * 107.74845 * 0.22579 * 15 14 13 20 20 H 0.97003 * 126.04206 * 179.76997 * 19 15 14 21 21 N 1.30839 * 125.89735 * 144.95855 * 13 9 7 22 22 H 0.97002 * 119.99640 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47265 * 305.51211 * 11 9 7 24 24 H 1.09007 * 109.47421 * 65.50498 * 11 9 7 25 25 H 1.00900 * 111.00515 * 180.02562 * 12 11 9 26 26 H 1.00902 * 111.00145 * 303.95486 * 12 11 9 27 27 H 1.07994 * 126.03696 * 359.94078 * 14 13 9 28 28 H 1.09007 * 115.55780 * 359.31653 * 16 15 14 29 29 H 1.09003 * 117.49953 * 0.02562 * 17 16 15 30 30 H 1.08997 * 117.49851 * 215.00322 * 17 16 15 31 31 H 1.08999 * 117.49629 * 107.47516 * 18 17 16 32 32 H 1.09001 * 117.49918 * 252.47535 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6054 1.9835 -1.3945 5 1 1.3966 2.6817 0.5885 6 1 3.4882 1.4739 0.8059 7 6 2.0045 -1.1942 0.0005 8 1 1.4673 -2.1278 -0.0773 9 6 3.5075 -1.1964 0.1097 10 1 3.8998 -0.2476 -0.2564 11 6 3.9124 -1.3852 1.5729 12 7 5.3702 -1.2559 1.6983 13 6 4.0694 -2.3246 -0.7165 14 6 3.4778 -3.5782 -0.9031 15 6 4.2882 -4.3056 -1.7062 16 6 4.0437 -5.7185 -2.1701 17 6 4.5083 -6.0895 -3.5799 18 6 5.2650 -6.6214 -2.3610 19 7 5.3573 -3.5414 -2.0127 20 1 6.1053 -3.8041 -2.5716 21 7 5.1945 -2.3003 -1.3839 22 1 -0.4850 0.8401 0.0004 23 1 3.4262 -0.6258 2.1853 24 1 3.6051 -2.3752 1.9102 25 1 5.6630 -1.3771 2.6563 26 1 5.8446 -1.9068 1.0905 27 1 2.5401 -3.9075 -0.4804 28 1 3.1275 -6.1819 -1.8039 29 1 4.9912 -5.3118 -4.1717 30 1 3.8978 -6.7967 -4.1412 31 1 5.1517 -7.6784 -2.1203 32 1 6.2454 -6.1938 -2.1513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = 66.271822 kcal Electronic energy + Delta-G solvation = -14831.013276 eV Core-core repulsion = 12406.545018 eV Total energy + Delta-G solvation = -2424.468258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.20358 -38.15500 -36.90665 -34.41627 -32.59402 -30.87748 -30.22203 -25.67531 -24.35164 -23.44533 -23.28159 -21.25972 -19.87728 -18.95881 -18.23187 -17.08934 -16.41897 -15.99483 -15.62171 -15.36778 -14.96614 -14.90172 -14.37498 -14.01932 -13.46028 -13.02804 -12.76566 -12.60470 -12.44617 -12.10873 -11.81921 -11.77849 -11.67413 -11.41601 -11.05163 -10.72285 -9.98102 -9.49977 -9.32731 -8.28438 -6.32689 0.93812 1.36449 1.39107 1.53612 1.92886 2.06046 2.36836 3.02149 3.07199 3.48807 3.78915 3.83328 4.00085 4.07357 4.29075 4.55825 4.57858 4.67032 4.72465 4.97535 4.99480 5.04058 5.18457 5.18524 5.29067 5.40522 5.61968 5.81158 6.21054 6.37289 6.57829 6.68027 6.78133 6.93410 7.33072 8.86945 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034633 B = 0.008132 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.283233 B = 3442.301167 C = 3810.866442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.506 4.506 8 H 0.050 0.950 9 C 0.089 3.911 10 H 0.038 0.962 11 C 0.084 3.916 12 N -0.853 5.853 13 C 0.102 3.898 14 C -0.278 4.278 15 C 0.125 3.875 16 C -0.117 4.117 17 C -0.162 4.162 18 C -0.153 4.153 19 N -0.474 5.474 20 H 0.443 0.557 21 N -0.329 5.329 22 H 0.267 0.733 23 H 0.061 0.939 24 H 0.020 0.980 25 H 0.344 0.656 26 H 0.338 0.662 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -12.359 -3.666 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.068 3.932 10 H 0.056 0.944 11 C -0.048 4.048 12 N -0.383 5.383 13 C -0.063 4.063 14 C -0.307 4.307 15 C -0.004 4.004 16 C -0.137 4.137 17 C -0.200 4.200 18 C -0.190 4.190 19 N -0.183 5.183 20 H 0.289 0.711 21 N -0.152 5.152 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.157 0.843 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.337 -10.793 -4.228 16.928 hybrid contribution -0.721 -0.552 0.268 0.946 sum 11.616 -11.345 -3.960 16.713 Atomic orbital electron populations 1.70002 1.07777 1.28061 1.51974 1.25719 0.95367 1.02184 0.94013 0.86005 0.79818 0.79688 0.79161 1.20303 1.20785 1.16891 1.21018 0.89823 0.93812 1.49847 0.93169 1.17618 0.93615 0.91223 0.90768 0.94378 1.21844 0.87307 0.98570 0.97097 1.58782 1.06258 1.60802 1.12467 1.22679 0.91283 0.96339 0.96013 1.21120 1.03969 0.95484 1.10169 1.20397 0.88821 0.93995 0.97234 1.20745 1.02016 0.88408 1.02554 1.23171 1.03447 1.03593 0.89742 1.23181 0.94688 1.00251 1.00906 1.46074 1.19593 1.10152 1.42490 0.71107 1.77262 1.20685 1.01052 1.16237 0.92347 0.92062 0.96148 0.84306 0.84981 0.85265 0.84849 0.88892 0.85964 0.85707 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.03 1.50 5.47 84.66 0.46 1.97 16 3 Si 0.93 45.99 26.99 68.60 1.85 47.84 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.25 -11.74 6.82 99.48 0.68 -11.06 16 7 C -0.51 -29.03 8.58 25.60 0.22 -28.81 16 8 H 0.05 3.11 6.94 -2.91 -0.02 3.09 16 9 C 0.09 4.43 2.10 -12.29 -0.03 4.40 16 10 H 0.04 2.00 5.29 -2.39 -0.01 1.99 16 11 C 0.08 3.66 6.21 86.30 0.54 4.20 16 12 N -0.85 -31.74 9.62 -186.73 -1.80 -33.53 16 13 C 0.10 4.64 5.31 43.10 0.23 4.86 16 14 C -0.28 -11.53 9.84 21.99 0.22 -11.32 16 15 C 0.12 4.00 6.63 41.41 0.27 4.27 16 16 C -0.12 -2.59 6.25 -11.51 -0.07 -2.67 16 17 C -0.16 -2.60 10.22 30.60 0.31 -2.29 16 18 C -0.15 -2.26 10.22 30.62 0.31 -1.95 16 19 N -0.47 -14.84 7.31 -48.00 -0.35 -15.19 16 20 H 0.44 10.21 8.96 -213.33 -1.91 8.30 16 21 N -0.33 -13.51 12.30 -47.38 -0.58 -14.09 16 22 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 25 H 0.34 10.46 9.08 -89.69 -0.81 9.64 16 26 H 0.34 12.42 7.78 -89.69 -0.70 11.73 16 27 H 0.13 5.60 7.33 -2.91 -0.02 5.58 16 28 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.42 272.73 -0.41 -69.83 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -2.29 Total: 30.41 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 2.47 Total: -27.34 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -2.43 Total: -120.74 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.85 Total: 47.84 kcal Total: -69.42 -0.41 -69.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.100 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds