Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48494 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46927 * 299.99806 * 3 2 1 6 6 H 1.48500 * 109.47320 * 59.99752 * 3 2 1 7 7 C 1.37882 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99592 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46678 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47429 * 54.99858 * 10 9 7 12 12 N 1.46908 * 109.47075 * 294.99951 * 10 9 7 13 13 C 1.50703 * 109.47220 * 175.00218 * 10 9 7 14 14 N 1.34881 * 126.11379 * 99.96945 * 13 10 9 15 15 H 0.97003 * 126.03656 * 0.04462 * 14 13 10 16 16 N 1.40025 * 107.93744 * 180.02562 * 14 13 10 17 17 C 1.31046 * 108.24380 * 359.97438 * 16 14 13 18 18 C 1.35458 * 126.10902 * 280.00043 * 13 10 9 19 19 C 1.51282 * 142.53417 * 359.97384 * 18 13 10 20 20 C 1.54346 * 105.21597 * 197.22346 * 19 18 13 21 21 C 1.51320 * 142.35768 * 179.66991 * 17 16 14 22 22 H 0.97005 * 119.99757 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47107 * 60.00184 * 9 7 2 24 24 H 1.09001 * 109.47351 * 299.99507 * 9 7 2 25 25 H 1.00901 * 110.99850 * 299.99992 * 12 10 9 26 26 H 1.00899 * 110.99990 * 63.95335 * 12 10 9 27 27 H 1.09004 * 110.29674 * 316.15887 * 19 18 13 28 28 H 1.09006 * 110.29676 * 78.18967 * 19 18 13 29 29 H 1.08998 * 110.76803 * 91.76091 * 20 19 18 30 30 H 1.09003 * 110.76434 * 214.98323 * 20 19 18 31 31 H 1.08997 * 110.29473 * 282.04183 * 21 17 16 32 32 H 1.08996 * 110.29639 * 44.17267 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 1 2.9294 -3.5545 0.8444 12 7 3.0083 -3.6550 -1.2526 13 6 1.4958 -4.9636 0.1277 14 7 1.1926 -5.8064 -0.8808 15 1 1.4191 -5.6822 -1.8159 16 7 0.4937 -6.8924 -0.3399 17 6 0.3823 -6.7060 0.9524 18 6 1.0058 -5.4959 1.2729 19 6 0.8954 -5.2480 2.7612 20 6 0.5361 -6.6180 3.3745 21 6 -0.1840 -7.3311 2.2088 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.3960 -3.7535 -2.0485 26 1 3.5700 -2.8204 -1.3296 27 1 1.8474 -4.8944 3.1572 28 1 0.1084 -4.5221 2.9662 29 1 1.4363 -7.1594 3.6653 30 1 -0.1324 -6.4964 4.2268 31 1 -1.2595 -7.1625 2.2632 32 1 0.0337 -8.3988 2.2310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260301624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = 58.162512 kcal Electronic energy + Delta-G solvation = -14880.856168 eV Core-core repulsion = 12456.036264 eV Total energy + Delta-G solvation = -2424.819904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11276 -36.27085 -35.28371 -32.53389 -30.14330 -29.15869 -27.92883 -26.68455 -24.41600 -22.31682 -20.93354 -19.13351 -18.65775 -17.02036 -16.26150 -15.41093 -15.03014 -14.68072 -13.79703 -13.68464 -13.34533 -12.81514 -12.53913 -12.45330 -12.14838 -11.56487 -11.41658 -11.09911 -10.89636 -10.78901 -10.71679 -10.52023 -10.06517 -9.90469 -9.28480 -8.80954 -8.54359 -8.11880 -7.66238 -6.15408 -4.21086 2.40659 3.18170 3.21583 3.23260 3.30267 3.33125 4.32623 4.46748 4.99211 5.15357 5.22622 5.24482 5.42056 5.52419 5.76708 5.87978 6.00065 6.11352 6.13653 6.36030 6.44316 6.48771 6.53042 6.72986 7.06878 7.33052 7.44206 7.71311 7.78555 7.87297 7.99963 8.18181 8.20700 8.85386 9.44754 10.95137 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.007272 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.660423 B = 3849.665087 C = 4212.339806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.148 3.852 11 H 0.094 0.906 12 N -0.845 5.845 13 C 0.145 3.855 14 N -0.466 5.466 15 H 0.438 0.562 16 N -0.297 5.297 17 C 0.048 3.952 18 C -0.272 4.272 19 C -0.036 4.036 20 C -0.116 4.116 21 C -0.028 4.028 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.325 0.675 26 H 0.355 0.645 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -9.835 3.532 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.035 4.035 10 C 0.034 3.966 11 H 0.111 0.889 12 N -0.373 5.373 13 C 0.016 3.984 14 N -0.174 5.174 15 H 0.282 0.718 16 N -0.120 5.120 17 C -0.119 4.119 18 C -0.284 4.284 19 C -0.075 4.075 20 C -0.154 4.154 21 C -0.067 4.067 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.136 0.864 26 H 0.170 0.830 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.581 -11.162 2.848 11.628 hybrid contribution 0.083 2.551 -0.260 2.566 sum 1.665 -8.611 2.588 9.144 Atomic orbital electron populations 1.69983 1.06144 1.26793 1.49730 1.25017 0.94830 0.99397 0.94881 0.86503 0.80079 0.83547 0.77689 1.19603 1.21007 1.20881 1.21133 0.92923 0.90588 1.52043 0.92313 1.19757 0.94255 0.91235 0.98240 1.20378 0.94515 0.88269 0.93395 0.88855 1.59239 1.27745 1.46716 1.03641 1.20597 0.97041 0.93103 0.87704 1.46151 1.45636 1.16083 1.09531 0.71785 1.76892 1.18264 1.08063 1.08750 1.23058 0.99115 0.97153 0.92585 1.20380 1.12302 0.99399 0.96305 1.20264 1.01647 0.96577 0.88991 1.22354 1.00188 0.96064 0.96771 1.20457 0.99618 0.99111 0.87529 0.92840 0.96661 0.95502 0.86439 0.83044 0.91549 0.90960 0.91141 0.90455 0.89828 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -13.85 8.55 -34.44 -0.29 -14.15 16 8 H 0.06 1.47 7.15 -52.49 -0.38 1.10 16 9 C 0.00 0.10 4.60 -27.88 -0.13 -0.03 16 10 C 0.15 2.96 3.22 -68.86 -0.22 2.74 16 11 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 12 N -0.84 -14.91 9.01 -5.65 -0.05 -14.96 16 13 C 0.15 2.82 6.17 -82.24 -0.51 2.31 16 14 N -0.47 -8.45 7.17 33.49 0.24 -8.21 16 15 H 0.44 6.83 8.13 -182.65 -1.49 5.34 16 16 N -0.30 -5.61 12.70 33.86 0.43 -5.18 16 17 C 0.05 0.85 8.10 -82.02 -0.66 0.18 16 18 C -0.27 -5.05 6.78 -104.72 -0.71 -5.76 16 19 C -0.04 -0.56 6.76 -26.89 -0.18 -0.74 16 20 C -0.12 -1.36 7.06 -25.26 -0.18 -1.54 16 21 C -0.03 -0.36 6.77 -26.81 -0.18 -0.54 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.33 5.39 8.22 -39.29 -0.32 5.07 16 26 H 0.36 6.34 7.90 -39.29 -0.31 6.03 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -30.37 269.49 -8.20 -38.58 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.43 Total: 11.02 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.16 Total: -15.96 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 1.36 Total: -53.39 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.37 -8.20 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.739 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds