Wall clock time and date at job start Mon Mar 30 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48494 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46927 * 299.99806 * 3 2 1 6 6 H 1.48500 * 109.47320 * 59.99752 * 3 2 1 7 7 C 1.37882 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99592 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46678 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47429 * 54.99858 * 10 9 7 12 12 N 1.46908 * 109.47075 * 294.99951 * 10 9 7 13 13 C 1.50703 * 109.47220 * 175.00218 * 10 9 7 14 14 N 1.34881 * 126.11379 * 99.96945 * 13 10 9 15 15 H 0.97003 * 126.03656 * 0.04462 * 14 13 10 16 16 N 1.40025 * 107.93744 * 180.02562 * 14 13 10 17 17 C 1.31046 * 108.24380 * 359.97438 * 16 14 13 18 18 C 1.35458 * 126.10902 * 280.00043 * 13 10 9 19 19 C 1.51282 * 142.53417 * 359.97384 * 18 13 10 20 20 C 1.54346 * 105.21597 * 197.22346 * 19 18 13 21 21 C 1.51320 * 142.35768 * 179.66991 * 17 16 14 22 22 H 0.97005 * 119.99757 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47107 * 60.00184 * 9 7 2 24 24 H 1.09001 * 109.47351 * 299.99507 * 9 7 2 25 25 H 1.00901 * 110.99850 * 299.99992 * 12 10 9 26 26 H 1.00899 * 110.99990 * 63.95335 * 12 10 9 27 27 H 1.09004 * 110.29674 * 316.15887 * 19 18 13 28 28 H 1.09006 * 110.29676 * 78.18967 * 19 18 13 29 29 H 1.08998 * 110.76803 * 91.76091 * 20 19 18 30 30 H 1.09003 * 110.76434 * 214.98323 * 20 19 18 31 31 H 1.08997 * 110.29473 * 282.04183 * 21 17 16 32 32 H 1.08996 * 110.29639 * 44.17267 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 1 2.9294 -3.5545 0.8444 12 7 3.0083 -3.6550 -1.2526 13 6 1.4958 -4.9636 0.1277 14 7 1.1926 -5.8064 -0.8808 15 1 1.4191 -5.6822 -1.8159 16 7 0.4937 -6.8924 -0.3399 17 6 0.3823 -6.7060 0.9524 18 6 1.0058 -5.4959 1.2729 19 6 0.8954 -5.2480 2.7612 20 6 0.5361 -6.6180 3.3745 21 6 -0.1840 -7.3311 2.2088 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.3960 -3.7535 -2.0485 26 1 3.5700 -2.8204 -1.3296 27 1 1.8474 -4.8944 3.1572 28 1 0.1084 -4.5221 2.9662 29 1 1.4363 -7.1594 3.6653 30 1 -0.1324 -6.4964 4.2268 31 1 -1.2595 -7.1625 2.2632 32 1 0.0337 -8.3988 2.2310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260301624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:54 Heat of formation + Delta-G solvation = 36.775025 kcal Electronic energy + Delta-G solvation = -14881.783599 eV Core-core repulsion = 12456.036264 eV Total energy + Delta-G solvation = -2425.747335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.49826 -37.69219 -36.75227 -34.53054 -31.54914 -30.57974 -29.69117 -27.95201 -26.18508 -23.77901 -22.48668 -20.48346 -20.03068 -18.82288 -17.88709 -16.77215 -16.61021 -16.43818 -15.20730 -15.04969 -14.76237 -14.38762 -14.22602 -14.00622 -13.63559 -13.12791 -12.89040 -12.65574 -12.45115 -12.38318 -12.00310 -11.93382 -11.76828 -11.34380 -11.24290 -10.65924 -10.19945 -9.66884 -9.14468 -8.24607 -6.37562 0.94569 1.39496 1.41338 1.53324 1.79191 1.88732 2.37949 3.09244 3.23123 3.57378 3.89167 4.15228 4.26540 4.32067 4.40736 4.68992 4.71154 4.84265 4.92453 5.00924 5.14684 5.28318 5.30818 5.33143 5.43593 5.50437 5.70061 5.74555 6.08249 6.15361 6.43651 6.53415 6.78040 6.80091 7.33224 8.86894 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.007272 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.660423 B = 3849.665087 C = 4212.339806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.017 3.983 10 C 0.165 3.835 11 H 0.091 0.909 12 N -0.831 5.831 13 C 0.120 3.880 14 N -0.465 5.465 15 H 0.444 0.556 16 N -0.316 5.316 17 C 0.041 3.959 18 C -0.291 4.291 19 C -0.043 4.043 20 C -0.102 4.102 21 C -0.028 4.028 22 H 0.263 0.737 23 H -0.014 1.014 24 H -0.007 1.007 25 H 0.333 0.667 26 H 0.356 0.644 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -10.387 4.397 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.022 4.022 10 C 0.052 3.948 11 H 0.109 0.891 12 N -0.360 5.360 13 C -0.010 4.010 14 N -0.174 5.174 15 H 0.290 0.710 16 N -0.139 5.139 17 C -0.126 4.126 18 C -0.302 4.302 19 C -0.082 4.082 20 C -0.139 4.139 21 C -0.067 4.067 22 H 0.072 0.928 23 H 0.005 0.995 24 H 0.011 0.989 25 H 0.144 0.856 26 H 0.171 0.829 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.512 -11.729 3.697 12.552 hybrid contribution -0.231 2.687 -0.540 2.751 sum 2.281 -9.042 3.156 9.845 Atomic orbital electron populations 1.70126 1.07999 1.27756 1.51198 1.25953 0.95603 1.03384 0.94529 0.85375 0.79331 0.78720 0.77467 1.18021 1.20810 1.20816 1.21528 0.93636 0.91229 1.50986 0.91075 1.19574 0.94333 0.93121 0.95167 1.19985 0.93302 0.87201 0.94347 0.89142 1.59213 1.27219 1.46492 1.03030 1.20589 0.98296 0.93312 0.88761 1.46173 1.45607 1.15860 1.09786 0.70996 1.76830 1.18772 1.08517 1.09764 1.23930 0.98427 0.97183 0.93068 1.21008 1.11699 0.99813 0.97722 1.20434 1.01484 0.98851 0.87413 1.22374 1.01354 0.93299 0.96910 1.20718 1.00277 1.00356 0.85370 0.92828 0.99528 0.98868 0.85629 0.82935 0.91361 0.92074 0.89664 0.87530 0.88518 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -28.22 8.55 25.60 0.22 -28.00 16 8 H 0.07 3.50 7.15 -2.91 -0.02 3.48 16 9 C 0.02 0.88 4.60 29.85 0.14 1.01 16 10 C 0.17 6.70 3.22 44.17 0.14 6.85 16 11 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 12 N -0.83 -29.01 9.01 -171.78 -1.55 -30.55 16 13 C 0.12 4.69 6.17 41.45 0.26 4.95 16 14 N -0.47 -16.93 7.17 -47.96 -0.34 -17.27 16 15 H 0.44 13.95 8.13 -213.36 -1.74 12.21 16 16 N -0.32 -11.78 12.70 -46.80 -0.59 -12.37 16 17 C 0.04 1.40 8.10 43.26 0.35 1.76 16 18 C -0.29 -10.72 6.78 -19.93 -0.14 -10.86 16 19 C -0.04 -1.30 6.76 30.49 0.21 -1.09 16 20 C -0.10 -2.08 7.06 31.55 0.22 -1.86 16 21 C -0.03 -0.65 6.77 30.54 0.21 -0.45 16 22 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 23 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.33 10.97 8.22 -89.69 -0.74 10.23 16 26 H 0.36 12.41 7.90 -89.69 -0.71 11.70 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -65.67 269.49 -0.13 -65.81 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -2.03 Total: 31.89 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 2.07 Total: -27.02 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -2.20 Total: -115.06 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.67 -0.13 -65.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.584 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds