Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00206 * 2 1 4 4 C 1.38748 * 120.05518 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94722 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05162 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94393 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 89.99997 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38250 * 120.11435 * 0.25013 * 6 5 4 17 17 C 1.38166 * 120.05415 * 359.45086 * 16 6 5 18 18 C 1.50695 * 120.03164 * 180.24713 * 17 16 6 19 19 N 1.46896 * 109.47535 * 260.32696 * 18 17 16 20 20 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47230 * 299.99779 * 1 2 3 22 22 H 1.09002 * 109.46472 * 60.00054 * 1 2 3 23 23 H 1.08002 * 120.02983 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.97567 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47210 * 330.00291 * 7 6 5 26 26 H 1.08994 * 109.47551 * 209.99943 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.96969 * 179.70292 * 16 6 5 29 29 H 1.09006 * 109.46877 * 20.32250 * 18 17 16 30 30 H 1.09000 * 109.47183 * 140.31865 * 18 17 16 31 31 H 1.00900 * 111.00210 * 179.97438 * 19 18 17 32 32 H 1.00903 * 110.99745 * 303.94597 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0184 -0.0028 8 6 4.2158 5.4663 1.4177 9 1 3.8985 4.8411 2.2391 10 6 4.8368 6.6716 1.6686 11 7 5.2235 7.4328 0.6684 12 14 5.1283 7.2232 3.4293 13 1 4.6043 6.1947 4.3635 14 1 6.5849 7.4022 3.6572 15 1 4.4282 8.5111 3.6670 16 6 4.0560 2.5170 -0.0079 17 6 3.4312 1.2847 -0.0011 18 6 4.2537 0.0220 -0.0024 19 7 4.3184 -0.5190 -1.3666 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 0.2129 2.3203 0.0014 24 1 1.3341 4.5114 0.0000 25 1 3.3575 5.7461 -0.5161 26 1 4.9434 4.9380 -0.5176 27 1 5.6600 8.2809 0.8449 28 1 5.1344 2.5751 -0.0140 29 1 5.2615 0.2446 0.3483 30 1 3.7930 -0.7124 0.6583 31 1 4.8653 -1.3664 -1.3939 32 1 3.3932 -0.6732 -1.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -27.546406 kcal Electronic energy + Delta-G solvation = -14592.634185 eV Core-core repulsion = 12131.804912 eV Total energy + Delta-G solvation = -2460.829273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82635 -37.22311 -34.71134 -33.03932 -30.63781 -30.19982 -27.71399 -26.25811 -24.51268 -23.01409 -21.35753 -19.67129 -17.57028 -16.29583 -16.01431 -15.79726 -15.42986 -14.65249 -14.33528 -13.90291 -13.59883 -13.38288 -12.76034 -12.49810 -11.97952 -11.84384 -11.71988 -11.35347 -11.18598 -10.64755 -10.58816 -10.50496 -10.14437 -9.52880 -9.32083 -8.58102 -8.40310 -8.21762 -7.33788 -6.01633 -4.05584 1.93363 2.12296 3.30417 3.38019 3.43130 3.55166 4.33108 4.50974 4.98923 5.10011 5.21600 5.24782 5.28049 5.33831 5.47653 5.57385 5.74347 5.96750 6.07546 6.23339 6.35828 6.58223 6.88034 7.15195 7.19693 7.28197 7.36915 7.57353 7.60936 7.86062 7.88375 7.94383 8.35520 9.00165 9.58169 11.07874 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036272 B = 0.006728 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.753253 B = 4160.576621 C = 4452.754247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.096 3.904 4 C -0.206 4.206 5 C -0.087 4.087 6 C -0.065 4.065 7 C 0.051 3.949 8 C -0.510 4.510 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.284 1.284 16 C -0.070 4.070 17 C -0.117 4.117 18 C 0.115 3.885 19 N -0.843 5.843 20 H 0.091 0.909 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.335 0.665 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -13.887 -1.722 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.052 3.948 4 C -0.225 4.225 5 C -0.105 4.105 6 C -0.065 4.065 7 C 0.014 3.986 8 C -0.549 4.549 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.088 4.088 17 C -0.118 4.118 18 C -0.015 4.015 19 N -0.373 5.373 20 H 0.109 0.891 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.135 0.865 24 H 0.138 0.862 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.147 0.853 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.491 -13.234 -1.933 14.866 hybrid contribution -0.648 -0.198 1.406 1.560 sum -7.139 -13.432 -0.528 15.220 Atomic orbital electron populations 1.22912 0.79392 1.02909 1.01177 1.85945 1.20544 1.27725 1.89846 1.18647 0.91605 0.83631 1.00940 1.21074 0.99015 0.92602 1.09830 1.20897 0.94758 0.96318 0.98549 1.20611 0.93206 0.97550 0.95159 1.18305 0.95504 0.87197 0.97609 1.21135 1.38341 1.03757 0.91628 0.92465 1.25017 0.95601 0.96599 0.97162 1.69972 1.40597 1.12209 1.30572 0.86502 0.77910 0.78564 0.84875 1.19707 1.20929 1.20974 1.20826 0.99902 0.90213 0.97878 1.19006 0.89900 0.95418 1.07467 1.20443 0.98743 0.92949 0.89329 1.58764 1.20657 1.35547 1.22302 0.89066 0.93051 0.93030 0.86518 0.86176 0.95427 0.95292 0.92925 0.85685 0.90579 0.94977 0.85320 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.33 -4.78 9.68 -19.42 -0.19 -4.96 16 3 C 0.10 1.65 6.66 -39.22 -0.26 1.39 16 4 C -0.21 -3.57 9.04 -39.43 -0.36 -3.92 16 5 C -0.09 -1.73 9.69 -39.61 -0.38 -2.12 16 6 C -0.07 -1.45 5.07 -104.60 -0.53 -1.98 16 7 C 0.05 1.32 5.10 -29.03 -0.15 1.17 16 8 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 9 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 12 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 C -0.07 -1.42 9.32 -39.60 -0.37 -1.79 16 17 C -0.12 -2.11 5.41 -104.48 -0.56 -2.67 16 18 C 0.12 1.73 6.57 -4.98 -0.03 1.70 16 19 N -0.84 -11.37 9.61 -11.41 -0.11 -11.48 16 20 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 23 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 24 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 25 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.13 2.50 8.04 -52.49 -0.42 2.08 16 29 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 30 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 31 H 0.33 3.58 9.08 -39.29 -0.36 3.22 16 32 H 0.34 4.51 8.93 -39.29 -0.35 4.16 16 LS Contribution 276.61 15.07 4.17 4.17 Total: -1.00 -30.86 276.61 -6.78 -37.64 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.31 Total: 3.95 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.07 Total: -20.08 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.63 Total: -37.36 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.19 Total: -4.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.86 -6.78 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.097 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds