Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00206 * 2 1 4 4 C 1.38748 * 120.05518 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94722 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05162 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94393 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 89.99997 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38250 * 120.11435 * 0.25013 * 6 5 4 17 17 C 1.38166 * 120.05415 * 359.45086 * 16 6 5 18 18 C 1.50695 * 120.03164 * 180.24713 * 17 16 6 19 19 N 1.46896 * 109.47535 * 260.32696 * 18 17 16 20 20 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47230 * 299.99779 * 1 2 3 22 22 H 1.09002 * 109.46472 * 60.00054 * 1 2 3 23 23 H 1.08002 * 120.02983 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.97567 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47210 * 330.00291 * 7 6 5 26 26 H 1.08994 * 109.47551 * 209.99943 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.08001 * 119.96969 * 179.70292 * 16 6 5 29 29 H 1.09006 * 109.46877 * 20.32250 * 18 17 16 30 30 H 1.09000 * 109.47183 * 140.31865 * 18 17 16 31 31 H 1.00900 * 111.00210 * 179.97438 * 19 18 17 32 32 H 1.00903 * 110.99745 * 303.94597 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0184 -0.0028 8 6 4.2158 5.4663 1.4177 9 1 3.8985 4.8411 2.2391 10 6 4.8368 6.6716 1.6686 11 7 5.2235 7.4328 0.6684 12 14 5.1283 7.2232 3.4293 13 1 4.6043 6.1947 4.3635 14 1 6.5849 7.4022 3.6572 15 1 4.4282 8.5111 3.6670 16 6 4.0560 2.5170 -0.0079 17 6 3.4312 1.2847 -0.0011 18 6 4.2537 0.0220 -0.0024 19 7 4.3184 -0.5190 -1.3666 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 0.2129 2.3203 0.0014 24 1 1.3341 4.5114 0.0000 25 1 3.3575 5.7461 -0.5161 26 1 4.9434 4.9380 -0.5176 27 1 5.6600 8.2809 0.8449 28 1 5.1344 2.5751 -0.0140 29 1 5.2615 0.2446 0.3483 30 1 3.7930 -0.7124 0.6583 31 1 4.8653 -1.3664 -1.3939 32 1 3.3932 -0.6732 -1.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -48.653911 kcal Electronic energy + Delta-G solvation = -14593.549475 eV Core-core repulsion = 12131.804912 eV Total energy + Delta-G solvation = -2461.744563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15562 -38.57441 -36.05076 -35.01752 -32.38742 -31.55571 -29.06461 -27.76389 -25.80182 -24.95634 -22.75220 -21.20759 -18.83667 -18.49366 -17.32191 -17.01854 -16.64021 -16.42515 -15.52736 -15.25290 -15.03833 -14.72632 -14.47871 -14.17160 -13.49797 -13.29884 -13.05653 -13.01533 -12.67824 -12.51046 -12.41267 -11.95801 -11.58390 -11.45882 -11.29654 -10.60668 -9.82646 -9.51130 -8.85970 -8.17722 -6.32809 0.45552 0.62471 1.39439 1.39908 1.53560 2.39856 2.43572 2.90352 3.10993 3.80939 3.92671 4.01091 4.16537 4.36557 4.44820 4.46453 4.55247 4.65496 4.76382 4.78835 4.90788 5.04968 5.33123 5.38761 5.43724 5.59886 5.75635 5.90556 6.07193 6.19693 6.22681 6.52280 6.68564 6.80205 7.35787 8.90133 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036272 B = 0.006728 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.753253 B = 4160.576621 C = 4452.754247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.109 3.891 4 C -0.199 4.199 5 C -0.097 4.097 6 C -0.098 4.098 7 C 0.061 3.939 8 C -0.527 4.527 9 H 0.054 0.946 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.082 4.082 17 C -0.121 4.121 18 C 0.120 3.880 19 N -0.848 5.848 20 H 0.123 0.877 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.152 0.848 24 H 0.120 0.880 25 H 0.003 0.997 26 H 0.001 0.999 27 H 0.265 0.735 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.352 0.648 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -15.829 -0.749 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.063 3.937 4 C -0.217 4.217 5 C -0.115 4.115 6 C -0.098 4.098 7 C 0.024 3.976 8 C -0.565 4.565 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.010 4.010 19 N -0.380 5.380 20 H 0.141 0.859 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.170 0.830 24 H 0.138 0.862 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.166 0.834 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.854 -15.205 -0.968 17.141 hybrid contribution -0.321 0.273 1.039 1.121 sum -8.175 -14.932 0.070 17.024 Atomic orbital electron populations 1.23307 0.76839 1.05418 1.01988 1.85965 1.23043 1.25948 1.89154 1.18717 0.91486 0.84671 0.98791 1.21338 1.00783 0.91355 1.08273 1.20935 0.93769 0.97772 0.99046 1.20307 0.94456 0.96040 0.99035 1.18032 0.94038 0.89287 0.96243 1.21433 1.38484 1.04099 0.92485 0.92817 1.25941 0.95122 0.96587 1.01800 1.70094 1.41289 1.12731 1.33007 0.85386 0.78073 0.78270 0.79259 1.18978 1.20136 1.20052 1.20766 0.99529 0.90883 0.98888 1.19249 0.91019 0.95513 1.06435 1.20386 0.98373 0.91856 0.90414 1.58684 1.21196 1.36795 1.21307 0.85910 0.92369 0.91987 0.83036 0.86202 0.97874 0.98111 0.92566 0.86621 0.90539 0.93763 0.83359 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.39 9.68 -92.39 -0.89 -9.28 16 3 C 0.11 3.48 6.66 22.51 0.15 3.63 16 4 C -0.20 -6.46 9.04 22.37 0.20 -6.26 16 5 C -0.10 -3.87 9.69 22.25 0.22 -3.66 16 6 C -0.10 -4.53 5.07 -19.85 -0.10 -4.63 16 7 C 0.06 3.37 5.10 29.10 0.15 3.52 16 8 C -0.53 -30.80 9.09 25.60 0.23 -30.56 16 9 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 10 C 0.00 0.20 5.46 84.66 0.46 0.66 16 11 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 12 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 C -0.08 -3.42 9.32 22.26 0.21 -3.22 16 17 C -0.12 -4.24 5.41 -19.77 -0.11 -4.34 16 18 C 0.12 3.39 6.57 85.56 0.56 3.96 16 19 N -0.85 -21.11 9.61 -190.01 -1.83 -22.94 16 20 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 22 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 23 H 0.15 3.78 6.30 -2.91 -0.02 3.76 16 24 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 25 H 0.00 0.17 8.08 -2.38 -0.02 0.15 16 26 H 0.00 0.03 8.08 -2.39 -0.02 0.01 16 27 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 28 H 0.12 4.88 8.04 -2.91 -0.02 4.86 16 29 H 0.08 2.14 8.01 -2.38 -0.02 2.12 16 30 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 31 H 0.35 6.68 9.08 -89.69 -0.81 5.87 16 32 H 0.34 8.25 8.93 -89.69 -0.80 7.45 16 Total: -1.00 -67.66 276.61 2.19 -65.47 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.49 Total: 16.04 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.09 Total: -39.47 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -1.54 Total: -79.67 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.89 Total: -9.28 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.66 2.19 -65.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.818 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds