Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48499 * 109.46954 * 270.00173 * 3 2 1 5 5 H 1.48504 * 109.46853 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47066 * 150.00065 * 3 2 1 7 7 C 1.37879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 N 1.35200 * 126.19105 * 99.68660 * 12 9 7 14 14 H 0.97002 * 126.00335 * 0.06017 * 13 12 9 15 15 N 1.40309 * 107.99451 * 179.97438 * 13 12 9 16 16 C 1.30128 * 108.12205 * 0.29777 * 15 13 12 17 17 C 1.34572 * 126.19191 * 279.99788 * 12 9 7 18 18 C 1.50877 * 128.32484 * 0.12170 * 17 12 9 19 19 C 1.53384 * 108.19394 * 163.29565 * 18 17 12 20 20 C 1.53018 * 109.72463 * 50.54045 * 19 18 17 21 21 C 1.50952 * 128.28924 * 179.97438 * 16 15 13 22 22 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 24 24 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 25 25 H 1.09004 * 109.71799 * 282.96724 * 18 17 12 26 26 H 1.09001 * 109.72096 * 43.57511 * 18 17 12 27 27 H 1.09000 * 109.43379 * 170.61910 * 19 18 17 28 28 H 1.09005 * 109.42939 * 290.46793 * 19 18 17 29 29 H 1.09000 * 109.42592 * 48.37067 * 20 19 18 30 30 H 1.09001 * 109.43098 * 168.19977 * 20 19 18 31 31 H 1.08999 * 109.71164 * 43.56571 * 21 16 15 32 32 H 1.08998 * 109.74761 * 282.94509 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1975 12 6 2.2304 -3.6446 -0.0027 13 7 2.6096 -4.3716 1.0722 14 1 2.2981 -4.2485 1.9826 15 7 3.5314 -5.3368 0.6393 16 6 3.7013 -5.1882 -0.6422 17 6 2.8901 -4.1251 -1.0727 18 6 2.8221 -3.6520 -2.5038 19 6 4.0362 -4.2156 -3.2527 20 6 4.1394 -5.7227 -3.0089 21 6 4.5921 -5.9830 -1.5660 22 1 -0.4850 0.8400 0.0004 23 1 0.9639 -2.5269 2.0368 24 1 -0.3012 -1.8583 1.1891 25 1 1.9040 -4.0132 -2.9673 26 1 2.8446 -2.5626 -2.5325 27 1 3.9229 -4.0280 -4.3204 28 1 4.9423 -3.7274 -2.8937 29 1 3.1658 -6.1842 -3.1741 30 1 4.8652 -6.1528 -3.6991 31 1 4.5017 -7.0454 -1.3400 32 1 5.6278 -5.6672 -1.4407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = 25.115680 kcal Electronic energy + Delta-G solvation = -15221.618781 eV Core-core repulsion = 12795.365858 eV Total energy + Delta-G solvation = -2426.252922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27563 -37.43093 -36.64175 -33.69901 -32.25412 -31.17787 -29.36376 -27.87963 -25.26036 -24.16085 -22.45021 -20.60104 -19.54859 -18.68422 -17.99701 -16.73275 -16.22685 -15.97148 -15.17441 -15.14106 -14.68453 -14.50732 -14.24313 -13.58768 -13.32214 -13.20100 -12.90071 -12.80827 -12.67521 -12.28974 -12.04460 -11.76700 -11.61344 -11.39855 -10.98612 -10.78854 -10.05506 -9.42019 -9.03727 -8.19795 -6.44498 1.15963 1.35889 1.39088 1.47820 1.96607 2.10714 2.35757 2.99486 3.73052 3.92122 4.15968 4.20477 4.37309 4.56817 4.68814 4.75837 4.78545 4.84683 4.97070 5.13173 5.15172 5.28227 5.33743 5.50983 5.57819 5.58815 5.65299 5.90195 6.01710 6.46440 6.61100 6.75694 6.94290 6.97016 7.30597 8.76110 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032545 B = 0.009230 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.133074 B = 3032.961176 C = 3464.229576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.042 0.958 9 C 0.273 3.727 10 H 0.033 0.967 11 N -0.845 5.845 12 C 0.130 3.870 13 N -0.480 5.480 14 H 0.438 0.562 15 N -0.333 5.333 16 C 0.072 3.928 17 C -0.273 4.273 18 C -0.035 4.035 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.034 4.034 22 H 0.271 0.729 23 H 0.316 0.684 24 H 0.355 0.645 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -6.995 -4.632 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.061 0.939 9 C 0.161 3.839 10 H 0.050 0.950 11 N -0.375 5.375 12 C 0.002 3.998 13 N -0.188 5.188 14 H 0.283 0.717 15 N -0.155 5.155 16 C -0.096 4.096 17 C -0.284 4.284 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.073 4.073 22 H 0.080 0.920 23 H 0.125 0.875 24 H 0.170 0.830 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.584 -8.284 -3.882 11.271 hybrid contribution -0.053 2.692 0.399 2.722 sum 6.531 -5.592 -3.483 9.276 Atomic orbital electron populations 1.69801 1.06751 1.28332 1.50085 1.25645 0.95726 1.02077 0.93674 0.85539 0.78405 0.79154 0.78424 1.19896 1.20353 1.20198 1.21754 0.93019 0.91714 1.52947 0.93928 1.17449 0.87927 0.87067 0.91460 0.94953 1.59463 1.18172 1.55986 1.03848 1.21287 0.96934 0.93719 0.87890 1.46120 1.35993 1.26766 1.09892 0.71749 1.76739 1.12200 1.12969 1.13627 1.22877 0.98284 0.96682 0.91767 1.19993 1.07165 1.03789 0.97444 1.19907 0.98869 0.99184 0.89425 1.21539 0.96846 0.96187 1.00203 1.21550 1.02397 0.95799 0.94676 1.20275 0.96623 0.98424 0.91933 0.91969 0.87458 0.82961 0.92387 0.93205 0.89811 0.92422 0.92018 0.88106 0.89123 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.46 11.54 21.45 0.25 -48.21 16 2 C 0.03 1.56 5.38 84.65 0.46 2.02 16 3 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -29.36 8.71 25.60 0.22 -29.14 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 9 C 0.27 13.59 2.99 43.42 0.13 13.72 16 10 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 11 N -0.85 -39.18 9.01 -174.94 -1.58 -40.76 16 12 C 0.13 5.94 6.09 41.20 0.25 6.19 16 13 N -0.48 -20.01 7.19 -48.28 -0.35 -20.35 16 14 H 0.44 16.46 8.15 -213.18 -1.74 14.72 16 15 N -0.33 -13.50 12.68 -47.13 -0.60 -14.10 16 16 C 0.07 2.70 7.10 43.44 0.31 3.00 16 17 C -0.27 -11.33 5.88 -20.10 -0.12 -11.45 16 18 C -0.04 -1.29 6.08 30.03 0.18 -1.10 16 19 C -0.11 -2.92 5.86 30.73 0.18 -2.74 16 20 C -0.11 -2.38 5.87 30.75 0.18 -2.20 16 21 C -0.03 -0.88 6.31 30.08 0.19 -0.69 16 22 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 23 H 0.32 13.67 8.23 -89.69 -0.74 12.93 16 24 H 0.35 17.54 7.08 -89.70 -0.63 16.91 16 25 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.56 8.10 -2.38 -0.02 1.54 16 29 H 0.06 1.43 8.10 -2.39 -0.02 1.42 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -59.10 264.25 -0.22 -59.33 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -1.96 Total: 42.54 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 1.98 Total: -22.39 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -2.27 Total: -123.42 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -59.10 -0.22 -59.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.441 kcal (2) G-P(sol) polarization free energy of solvation -59.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds