Wall clock time and date at job start Mon Mar 30 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48499 * 109.46948 * 239.99577 * 3 2 1 5 5 H 1.48497 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47138 * 119.99729 * 3 2 1 7 7 C 1.37885 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99843 * 185.59795 * 7 2 1 9 9 C 1.50701 * 119.99988 * 5.60793 * 7 2 1 10 10 N 1.46499 * 109.46910 * 303.63206 * 9 7 2 11 11 C 1.35309 * 125.86516 * 285.17292 * 10 9 7 12 12 C 1.35349 * 106.17354 * 180.02562 * 11 10 9 13 13 N 1.33773 * 106.49575 * 359.97438 * 12 11 10 14 14 N 1.28632 * 108.88611 * 359.73861 * 13 12 11 15 15 C 1.52993 * 109.47100 * 183.62804 * 9 7 2 16 16 C 1.52996 * 109.47471 * 180.02562 * 15 9 7 17 17 C 1.52998 * 109.47149 * 60.00018 * 16 15 9 18 18 C 1.53005 * 109.47164 * 300.00380 * 17 16 15 19 19 C 1.52997 * 109.46754 * 59.99843 * 18 17 16 20 20 H 0.96996 * 120.00303 * 0.02562 * 1 2 3 21 21 H 1.07998 * 126.91258 * 359.97438 * 11 10 9 22 22 H 1.08000 * 126.74989 * 180.02562 * 12 11 10 23 23 H 1.09000 * 109.47352 * 300.00442 * 15 9 7 24 24 H 1.09003 * 109.47028 * 59.99728 * 15 9 7 25 25 H 1.09002 * 109.47491 * 180.02562 * 16 15 9 26 26 H 1.08999 * 109.46775 * 300.00014 * 16 15 9 27 27 H 1.08998 * 109.47113 * 180.02562 * 17 16 15 28 28 H 1.08999 * 109.47285 * 60.00309 * 17 16 15 29 29 H 1.08999 * 109.46961 * 300.00127 * 18 17 16 30 30 H 1.08994 * 109.47225 * 180.02562 * 18 17 16 31 31 H 1.09006 * 109.46607 * 180.02562 * 19 18 17 32 32 H 1.08999 * 109.47155 * 60.00402 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1963 0.0918 9 6 1.2564 -2.4962 -0.1264 10 7 0.2558 -2.5903 0.9394 11 6 0.5078 -2.8548 2.2423 12 6 -0.6927 -2.8484 2.8674 13 7 -1.6083 -2.5833 1.9287 14 7 -1.0135 -2.4298 0.7985 15 6 2.2392 -3.6627 -0.0079 16 6 1.4799 -4.9846 -0.1374 17 6 0.7830 -5.0412 -1.4983 18 6 -0.1999 -3.8746 -1.6169 19 6 0.5596 -2.5528 -1.4874 20 1 -0.4850 0.8400 -0.0004 21 1 1.4726 -3.0355 2.6926 22 1 -0.8754 -3.0223 3.9175 23 1 2.9837 -3.5926 -0.8009 24 1 2.7361 -3.6221 0.9615 25 1 2.1800 -5.8157 -0.0525 26 1 0.7352 -5.0549 0.6554 27 1 0.2416 -5.9827 -1.5903 28 1 1.5277 -4.9709 -2.2911 29 1 -0.9446 -3.9449 -0.8241 30 1 -0.6967 -3.9152 -2.5862 31 1 -0.1407 -1.7217 -1.5714 32 1 1.3043 -2.4824 -2.2802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260352944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:25 Heat of formation + Delta-G solvation = 66.588628 kcal Electronic energy + Delta-G solvation = -16168.279464 eV Core-core repulsion = 13743.824944 eV Total energy + Delta-G solvation = -2424.454520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.57766 -39.38697 -35.23402 -33.52608 -32.07303 -30.79394 -30.75983 -26.92649 -24.07865 -23.68428 -22.39993 -22.02246 -20.37040 -18.90238 -17.39471 -16.81684 -16.09573 -15.69868 -15.44509 -14.94427 -14.65146 -14.54762 -13.99267 -13.57237 -13.03440 -12.87957 -12.81023 -12.67094 -12.22840 -12.08950 -11.95577 -11.84764 -11.43390 -11.28798 -11.18081 -10.71134 -10.61429 -10.15130 -9.67516 -8.19025 -6.48492 1.37092 1.39256 1.46122 1.52120 2.18019 2.31669 2.34741 3.16777 3.95612 4.01427 4.08402 4.21984 4.44454 4.51384 4.58416 4.72026 4.73692 4.81313 4.87842 4.91267 5.11363 5.20482 5.27843 5.31503 5.39554 5.52430 5.56774 5.59409 5.78242 6.02199 6.03023 6.49019 6.71079 7.26946 8.30043 8.73939 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.014516 C = 0.011732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.254435 B = 1928.408503 C = 2385.991891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.032 3.968 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.272 3.728 10 N -0.211 5.211 11 C -0.075 4.075 12 C -0.088 4.088 13 N -0.361 5.361 14 N -0.075 5.075 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.099 4.099 20 H 0.260 0.740 21 H 0.192 0.808 22 H 0.199 0.801 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -7.539 -0.203 9.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.097 0.903 9 C 0.194 3.806 10 N -0.006 5.006 11 C -0.228 4.228 12 C -0.247 4.247 13 N -0.225 5.225 14 N -0.054 5.054 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.137 4.137 20 H 0.069 0.931 21 H 0.209 0.791 22 H 0.216 0.784 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.505 -7.133 -1.249 8.528 hybrid contribution 0.985 1.267 0.933 1.856 sum 5.490 -5.866 -0.316 8.041 Atomic orbital electron populations 1.70227 1.06980 1.27511 1.45484 1.25859 0.95454 1.02729 0.93392 0.85674 0.78340 0.78827 0.79229 1.18657 1.22142 1.19606 1.21523 0.94120 0.89941 1.53868 0.90303 1.19076 0.83590 0.95044 0.82927 1.48526 1.06358 1.37118 1.08625 1.23675 1.01998 1.10843 0.86280 1.23782 0.89617 1.09770 1.01557 1.74902 1.29659 1.20469 0.97436 1.78038 0.91744 1.16923 1.18719 1.21840 0.97402 0.92737 1.02886 1.21549 0.99143 0.97552 0.97144 1.21523 0.98318 0.97425 0.97588 1.21651 0.98355 0.95448 1.00772 1.21479 0.99130 0.97168 0.95955 0.93106 0.79148 0.78415 0.89333 0.91508 0.89479 0.94597 0.91373 0.90598 0.93975 0.92270 0.92875 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.61 9.99 21.45 0.21 -48.39 16 2 C 0.03 1.64 5.20 84.66 0.44 2.08 16 3 Si 0.95 41.22 29.54 68.60 2.03 43.24 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.30 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.56 -26.97 8.11 25.60 0.21 -26.77 16 8 H 0.08 3.64 7.75 -2.91 -0.02 3.62 16 9 C 0.27 11.98 0.43 2.86 0.00 11.98 16 10 N -0.21 -9.89 1.62 -310.94 -0.50 -10.39 16 11 C -0.07 -3.14 10.09 83.49 0.84 -2.29 16 12 C -0.09 -3.72 12.05 83.73 1.01 -2.71 16 13 N -0.36 -18.18 12.41 -58.26 -0.72 -18.91 16 14 N -0.07 -3.89 9.11 37.02 0.34 -3.55 16 15 C -0.11 -3.79 4.36 30.59 0.13 -3.65 16 16 C -0.12 -3.55 5.75 30.59 0.18 -3.38 16 17 C -0.11 -3.35 5.92 30.60 0.18 -3.17 16 18 C -0.12 -4.76 5.71 30.60 0.17 -4.58 16 19 C -0.10 -4.35 4.21 30.59 0.13 -4.22 16 20 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 21 H 0.19 6.56 7.60 -2.91 -0.02 6.54 16 22 H 0.20 6.48 8.06 -2.91 -0.02 6.46 16 23 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 24 H 0.07 2.18 7.39 -2.39 -0.02 2.16 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.04 1.24 7.10 -2.39 -0.02 1.23 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.85 6.15 -2.39 -0.01 1.84 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 2.78 6.47 -2.38 -0.02 2.77 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -62.03 253.50 5.75 -56.28 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 1.10 Total: 18.43 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.29 Total: -36.71 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -0.67 Total: -81.24 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -62.03 5.75 -56.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.866 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds