Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47500 * 95.28598 * 3 2 1 5 5 H 1.48501 * 109.46875 * 215.29114 * 3 2 1 6 6 H 1.48502 * 109.46682 * 335.28883 * 3 2 1 7 7 C 1.37882 * 119.99621 * 180.26813 * 2 1 3 8 8 H 1.07993 * 120.00258 * 7.99707 * 7 2 1 9 9 C 1.50707 * 119.99481 * 187.99489 * 7 2 1 10 10 H 1.08997 * 109.47243 * 3.08742 * 9 7 2 11 11 C 1.53011 * 109.46680 * 243.09091 * 9 7 2 12 12 N 1.46898 * 109.47196 * 65.29259 * 11 9 7 13 13 C 1.50693 * 109.47220 * 123.09520 * 9 7 2 14 14 N 1.34892 * 126.11648 * 59.68414 * 13 9 7 15 15 H 0.96992 * 126.02776 * 0.02562 * 14 13 9 16 16 N 1.40022 * 107.93353 * 179.85064 * 14 13 9 17 17 C 1.31041 * 108.25119 * 0.42039 * 16 14 13 18 18 C 1.35463 * 126.11047 * 239.99607 * 13 9 7 19 19 C 1.51288 * 142.53099 * 0.02562 * 18 13 9 20 20 C 1.54333 * 105.21519 * 162.79934 * 19 18 13 21 21 C 1.51317 * 142.35896 * 179.77587 * 17 16 14 22 22 H 0.96998 * 120.00409 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46529 * 185.28965 * 11 9 7 24 24 H 1.09000 * 109.47227 * 305.28653 * 11 9 7 25 25 H 1.00893 * 110.99974 * 180.27855 * 12 11 9 26 26 H 1.00904 * 110.99644 * 304.22609 * 12 11 9 27 27 H 1.08996 * 110.29351 * 281.71046 * 19 18 13 28 28 H 1.09001 * 110.29050 * 43.84670 * 19 18 13 29 29 H 1.09006 * 110.75467 * 268.21974 * 20 19 18 30 30 H 1.08996 * 110.93378 * 144.89369 * 20 19 18 31 31 H 1.09002 * 110.29408 * 316.13565 * 21 17 16 32 32 H 1.09000 * 110.29943 * 78.26749 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6084 1.9820 1.3941 5 1 3.4863 1.4749 -0.8089 6 1 1.3951 2.6823 -0.5853 7 6 2.0044 -1.1941 -0.0056 8 1 1.4723 -2.1242 -0.1401 9 6 3.5005 -1.2013 0.1759 10 1 3.8502 -0.1838 0.3506 11 6 4.1644 -1.7594 -1.0846 12 7 3.9200 -0.8486 -2.2110 13 6 3.8591 -2.0656 1.3571 14 7 3.5806 -3.3781 1.4956 15 1 3.1139 -3.9333 0.8516 16 7 4.0877 -3.7985 2.7312 17 6 4.6443 -2.7677 3.3185 18 6 4.5135 -1.6618 2.4724 19 6 5.1466 -0.4504 3.1208 20 6 5.2845 -0.8159 4.6139 21 6 5.3730 -2.3562 4.5792 22 1 -0.4850 0.8400 -0.0004 23 1 5.2377 -1.8525 -0.9190 24 1 3.7455 -2.7396 -1.3123 25 1 4.3449 -1.1976 -3.0569 26 1 2.9318 -0.6915 -2.3410 27 1 6.1278 -0.2587 2.6867 28 1 4.5029 0.4213 3.0025 29 1 4.4069 -0.4921 5.1735 30 1 6.1918 -0.3857 5.0379 31 1 4.8839 -2.7827 5.4549 32 1 6.4147 -2.6740 4.5347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = 39.812885 kcal Electronic energy + Delta-G solvation = -15244.457514 eV Core-core repulsion = 12818.841910 eV Total energy + Delta-G solvation = -2425.615604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36462 -37.54877 -36.66717 -34.28063 -32.60020 -30.40310 -29.61327 -27.53493 -26.13396 -23.64850 -22.18855 -20.46796 -19.96687 -19.02019 -17.92250 -16.61740 -16.40865 -16.21162 -15.87181 -14.93319 -14.68407 -14.52565 -14.19429 -13.97497 -13.56817 -13.38173 -12.86551 -12.64494 -12.38622 -11.97861 -11.93431 -11.80346 -11.71610 -11.53143 -11.06815 -10.76046 -10.02695 -9.43595 -9.05820 -8.34690 -6.41524 1.10430 1.40031 1.44409 1.63508 1.90728 2.01711 2.38189 3.04198 3.33798 3.77424 4.01458 4.26682 4.32650 4.34862 4.38461 4.63054 4.75573 4.86073 4.92021 4.96667 5.02685 5.07676 5.23919 5.31674 5.43246 5.49117 5.59156 5.86871 6.15232 6.36496 6.53269 6.62562 6.82461 6.92821 7.27258 8.79891 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.010950 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.283915 B = 2556.410331 C = 2857.832179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.033 3.967 3 Si 0.926 3.074 4 H -0.277 1.277 5 H -0.217 1.217 6 H -0.295 1.295 7 C -0.512 4.512 8 H 0.034 0.966 9 C 0.071 3.929 10 H 0.063 0.937 11 C 0.085 3.915 12 N -0.846 5.846 13 C 0.139 3.861 14 N -0.473 5.473 15 H 0.438 0.562 16 N -0.327 5.327 17 C 0.040 3.960 18 C -0.312 4.312 19 C -0.041 4.041 20 C -0.106 4.106 21 C -0.024 4.024 22 H 0.267 0.733 23 H 0.061 0.939 24 H 0.013 0.987 25 H 0.344 0.656 26 H 0.344 0.656 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.515 -0.351 4.481 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.167 4.167 3 Si 0.750 3.250 4 H -0.203 1.203 5 H -0.140 1.140 6 H -0.222 1.222 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.050 3.950 10 H 0.081 0.919 11 C -0.047 4.047 12 N -0.377 5.377 13 C 0.009 3.991 14 N -0.180 5.180 15 H 0.283 0.717 16 N -0.149 5.149 17 C -0.127 4.127 18 C -0.323 4.323 19 C -0.080 4.080 20 C -0.143 4.143 21 C -0.063 4.063 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.496 -0.972 4.997 13.493 hybrid contribution -1.330 0.172 -1.163 1.775 sum 11.166 -0.800 3.834 11.833 Atomic orbital electron populations 1.70044 1.08351 1.28323 1.50906 1.25812 0.95157 1.02673 0.93065 0.86040 0.80944 0.78550 0.79426 1.20298 1.13951 1.22177 1.20824 0.90426 0.93353 1.50333 0.94766 1.17977 0.94742 0.94393 0.87884 0.91922 1.21654 0.98076 0.92949 0.92029 1.58691 1.20340 1.50878 1.07814 1.21078 0.94077 0.85628 0.98293 1.46184 1.47729 1.07933 1.16113 0.71744 1.76779 1.20389 1.22711 0.95070 1.23922 0.97903 0.91233 0.99680 1.21035 1.14039 1.00257 0.97003 1.20413 0.99281 0.92934 0.95332 1.22364 1.03882 0.93611 0.94479 1.20657 0.99543 0.96068 0.90058 0.92413 0.92038 0.96882 0.84376 0.84200 0.89892 0.93272 0.91289 0.86640 0.89328 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 2 C 0.03 1.80 5.47 84.66 0.46 2.26 16 3 Si 0.93 42.65 26.89 68.60 1.84 44.50 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.22 -9.29 6.88 99.48 0.68 -8.60 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.51 -27.12 7.87 25.60 0.20 -26.92 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.07 3.17 2.34 -12.28 -0.03 3.14 16 10 H 0.06 2.87 4.86 -2.39 -0.01 2.85 16 11 C 0.08 3.22 6.21 86.31 0.54 3.75 16 12 N -0.85 -30.27 9.62 -186.70 -1.80 -32.07 16 13 C 0.14 6.03 5.70 41.44 0.24 6.27 16 14 N -0.47 -19.65 7.35 -47.95 -0.35 -20.01 16 15 H 0.44 16.84 8.96 -213.38 -1.91 14.93 16 16 N -0.33 -13.41 12.70 -46.80 -0.59 -14.00 16 17 C 0.04 1.47 8.10 43.26 0.35 1.82 16 18 C -0.31 -12.36 6.76 -19.93 -0.13 -12.50 16 19 C -0.04 -1.28 6.76 30.49 0.21 -1.08 16 20 C -0.11 -2.41 7.05 31.50 0.22 -2.19 16 21 C -0.02 -0.60 6.76 30.49 0.21 -0.40 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.34 9.81 9.08 -89.70 -0.81 9.00 16 26 H 0.34 13.63 8.08 -89.69 -0.72 12.90 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.37 267.13 -0.65 -67.03 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -2.31 Total: 36.36 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 2.26 Total: -25.82 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -2.44 Total: -122.07 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.84 Total: 44.50 kcal Total: -66.37 -0.65 -67.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.840 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds