Wall clock time and date at job start Mon Mar 30 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99737 * 2 1 4 4 H 1.48508 * 109.47058 * 264.99337 * 3 2 1 5 5 H 1.48503 * 109.47520 * 24.98848 * 3 2 1 6 6 H 1.48497 * 109.47564 * 144.99336 * 3 2 1 7 7 C 1.37877 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 189.38429 * 7 2 1 9 9 C 1.50694 * 120.00249 * 9.39119 * 7 2 1 10 10 H 1.08996 * 109.47096 * 305.44335 * 9 7 2 11 11 C 1.52998 * 109.47070 * 65.44056 * 9 7 2 12 12 N 1.46897 * 109.47322 * 183.20553 * 11 9 7 13 13 C 1.50702 * 109.47313 * 185.44190 * 9 7 2 14 14 N 1.34885 * 126.11132 * 300.02712 * 13 9 7 15 15 H 0.96999 * 126.03541 * 359.96387 * 14 13 9 16 16 N 1.40025 * 107.93523 * 179.97438 * 14 13 9 17 17 C 1.31037 * 108.24464 * 359.97438 * 16 14 13 18 18 C 1.35455 * 126.11296 * 119.71039 * 13 9 7 19 19 C 1.51289 * 142.53035 * 0.80717 * 18 13 9 20 20 C 1.54343 * 105.27161 * 162.21502 * 19 18 13 21 21 C 1.51319 * 142.35632 * 179.97438 * 17 16 14 22 22 H 0.96992 * 120.00454 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47704 * 303.21007 * 11 9 7 24 24 H 1.09003 * 109.47204 * 63.21174 * 11 9 7 25 25 H 1.00904 * 111.00047 * 56.04382 * 12 11 9 26 26 H 1.00899 * 111.00824 * 180.02562 * 12 11 9 27 27 H 1.09002 * 110.42484 * 43.17362 * 19 18 13 28 28 H 1.09003 * 110.18189 * 281.12975 * 19 18 13 29 29 H 1.09006 * 110.76529 * 268.03766 * 20 19 18 30 30 H 1.08994 * 110.92909 * 144.71225 * 20 19 18 31 31 H 1.08998 * 110.29531 * 316.16613 * 21 17 16 32 32 H 1.09005 * 110.29278 * 78.29288 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6024 1.9853 -1.3948 5 1 1.3976 2.6810 0.5914 6 1 3.4897 1.4732 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0737 -1.2002 0.1531 9 6 1.2663 -2.4905 -0.2118 10 1 0.4573 -2.5711 0.5142 11 6 0.6861 -2.5210 -1.6272 12 7 -0.0979 -3.7500 -1.8087 13 6 2.2178 -3.6455 -0.0340 14 7 3.3346 -3.8737 -0.7552 15 1 3.6674 -3.3233 -1.4812 16 7 3.9285 -5.0457 -0.2711 17 6 3.1907 -5.5046 0.7098 18 6 2.1078 -4.6367 0.8827 19 6 1.2294 -5.1405 2.0067 20 6 1.6400 -6.6138 2.2143 21 6 3.1001 -6.6322 1.7148 22 1 -0.4850 0.8399 -0.0004 23 1 0.0421 -1.6541 -1.7748 24 1 1.4985 -2.4979 -2.3535 25 1 -0.8180 -3.8266 -1.1059 26 1 -0.4918 -3.7941 -2.7366 27 1 0.1782 -5.0769 1.7258 28 1 1.4131 -4.5654 2.9142 29 1 1.0176 -7.2768 1.6131 30 1 1.5881 -6.8877 3.2679 31 1 3.3230 -7.5851 1.2350 32 1 3.7857 -6.4558 2.5437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:59 Heat of formation + Delta-G solvation = 59.981274 kcal Electronic energy + Delta-G solvation = -15176.641282 eV Core-core repulsion = 12751.900246 eV Total energy + Delta-G solvation = -2424.741037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65769 -35.91383 -34.95426 -32.35061 -30.63923 -28.65853 -27.94856 -25.92463 -23.97810 -22.24355 -20.82940 -18.73606 -18.31870 -16.68852 -16.01121 -15.12204 -14.82051 -14.58600 -13.81062 -13.28501 -13.21246 -12.60729 -12.53576 -12.25970 -12.07127 -11.34646 -11.23252 -11.06864 -10.70770 -10.68353 -10.55460 -10.28186 -9.81714 -9.60389 -9.39321 -8.58229 -8.32810 -7.76261 -7.29549 -6.24605 -4.29084 2.90869 3.19375 3.26869 3.30309 3.64652 3.68608 4.28958 4.82725 5.06804 5.32191 5.41776 5.57643 5.69501 5.90577 6.04633 6.13566 6.20628 6.36254 6.46478 6.62692 6.66624 6.74882 6.82996 7.03409 7.23293 7.49746 7.61649 7.71821 7.86267 8.16188 8.24116 8.32366 8.65536 8.74741 9.36169 10.83189 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.008830 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.416059 B = 3170.382318 C = 3316.866172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.102 3.898 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.855 5.855 13 C 0.191 3.809 14 N -0.470 5.470 15 H 0.434 0.566 16 N -0.313 5.313 17 C 0.043 3.957 18 C -0.293 4.293 19 C -0.029 4.029 20 C -0.115 4.115 21 C -0.025 4.025 22 H 0.264 0.736 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.334 0.666 26 H 0.321 0.679 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -7.735 1.314 7.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.081 3.919 10 H 0.076 0.924 11 C -0.060 4.060 12 N -0.382 5.382 13 C 0.062 3.938 14 N -0.176 5.176 15 H 0.278 0.722 16 N -0.136 5.136 17 C -0.124 4.124 18 C -0.304 4.304 19 C -0.068 4.068 20 C -0.153 4.153 21 C -0.065 4.065 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.145 0.855 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.936 -8.183 0.759 8.443 hybrid contribution -0.872 2.197 -0.216 2.373 sum 1.064 -5.987 0.543 6.105 Atomic orbital electron populations 1.69935 1.05970 1.27170 1.48959 1.24945 0.94848 0.99274 0.94301 0.86568 0.79963 0.82932 0.78418 1.20409 1.21068 1.19787 1.20970 0.94251 0.89935 1.51016 0.92313 1.17658 0.92262 0.88144 0.93798 0.92438 1.21931 0.96181 0.89557 0.98297 1.58961 1.30717 1.41947 1.06595 1.20797 0.88091 0.95341 0.89575 1.46107 1.19949 1.20859 1.30677 0.72202 1.76789 1.21692 0.99706 1.15393 1.22902 0.95138 0.98509 0.95828 1.20260 1.03409 1.00435 1.06256 1.20121 0.97936 0.93552 0.95142 1.22312 0.95104 0.97429 1.00495 1.20361 0.97526 0.94107 0.94479 0.92592 0.93179 0.93894 0.85486 0.86897 0.91982 0.92028 0.91338 0.90974 0.91214 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 12.15 55.43 0.67 -23.02 16 2 C 0.07 1.82 5.18 -17.82 -0.09 1.73 16 3 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.61 8.47 -34.44 -0.29 -13.90 16 8 H 0.06 1.56 7.76 -52.48 -0.41 1.15 16 9 C 0.10 2.44 2.21 -92.93 -0.20 2.23 16 10 H 0.06 1.51 8.06 -51.93 -0.42 1.09 16 11 C 0.07 1.56 6.05 -3.83 -0.02 1.54 16 12 N -0.85 -16.21 9.29 -10.37 -0.10 -16.31 16 13 C 0.19 4.31 5.34 -82.24 -0.44 3.87 16 14 N -0.47 -10.07 7.35 33.49 0.25 -9.82 16 15 H 0.43 8.49 8.96 -182.65 -1.64 6.86 16 16 N -0.31 -6.74 12.70 33.85 0.43 -6.31 16 17 C 0.04 0.86 8.10 -82.02 -0.66 0.20 16 18 C -0.29 -6.17 6.76 -104.72 -0.71 -6.88 16 19 C -0.03 -0.50 6.76 -26.89 -0.18 -0.68 16 20 C -0.12 -1.56 7.06 -25.33 -0.18 -1.74 16 21 C -0.03 -0.38 6.76 -26.89 -0.18 -0.56 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.05 1.21 6.83 -51.93 -0.35 0.85 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.33 6.17 8.99 -39.29 -0.35 5.82 16 26 H 0.32 5.31 9.08 -39.29 -0.36 4.95 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 270.03 15.07 4.07 4.07 Total: -1.00 -28.88 270.03 -8.29 -37.17 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.62 Total: 13.06 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.97 Total: -14.20 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 1.25 Total: -55.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.88 -8.29 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.149 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds